Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   JWB57_RS18870 Genome accession   NZ_CP070358
Coordinates   3868949..3869767 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3863949..3874767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWB57_RS18835 (JWB57_01445) - 3864531..3864661 (-) 131 Protein_3674 hypothetical protein -
  JWB57_RS18840 (JWB57_01450) rpoZ 3864700..3864978 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  JWB57_RS18845 (JWB57_01455) gmk 3865051..3865680 (-) 630 WP_000015937.1 guanylate kinase -
  JWB57_RS18850 (JWB57_01460) ispH 3865803..3866753 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  JWB57_RS18855 (JWB57_01465) fimU 3866923..3867396 (+) 474 WP_001214060.1 GspH/FimT family pseudopilin Machinery gene
  JWB57_RS18860 (JWB57_01470) pilV 3867390..3867950 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  JWB57_RS18865 (JWB57_01475) pilW 3867951..3868952 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  JWB57_RS18870 (JWB57_01480) pilX 3868949..3869767 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  JWB57_RS18875 (JWB57_01485) pilY1 3869779..3873633 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  JWB57_RS18880 (JWB57_01490) pilY2 3873644..3874126 (+) 483 WP_001046489.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JWB57_RS18885 (JWB57_01495) pilE 3874123..3874548 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=539420 JWB57_RS18870 WP_000149374.1 3868949..3869767(+) (pilX) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=539420 JWB57_RS18870 WP_000149374.1 3868949..3869767(+) (pilX) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993