Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   JWB57_RS18855 Genome accession   NZ_CP070358
Coordinates   3866923..3867396 (+) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3861923..3872396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWB57_RS18830 (JWB57_01440) - 3862386..3864491 (-) 2106 WP_001117590.1 HD domain-containing protein -
  JWB57_RS18835 (JWB57_01445) - 3864531..3864661 (-) 131 Protein_3674 hypothetical protein -
  JWB57_RS18840 (JWB57_01450) rpoZ 3864700..3864978 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  JWB57_RS18845 (JWB57_01455) gmk 3865051..3865680 (-) 630 WP_000015937.1 guanylate kinase -
  JWB57_RS18850 (JWB57_01460) ispH 3865803..3866753 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  JWB57_RS18855 (JWB57_01465) fimU 3866923..3867396 (+) 474 WP_001214060.1 GspH/FimT family pseudopilin Machinery gene
  JWB57_RS18860 (JWB57_01470) pilV 3867390..3867950 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  JWB57_RS18865 (JWB57_01475) pilW 3867951..3868952 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  JWB57_RS18870 (JWB57_01480) pilX 3868949..3869767 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=539417 JWB57_RS18855 WP_001214060.1 3866923..3867396(+) (fimU) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=539417 JWB57_RS18855 WP_001214060.1 3866923..3867396(+) (fimU) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987