Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   JWB57_RS18880 Genome accession   NZ_CP070358
Coordinates   3873644..3874126 (+) Length   160 a.a.
NCBI ID   WP_001046489.1    Uniprot ID   A0A0J0ZLV7
Organism   Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3868644..3879126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWB57_RS18870 (JWB57_01480) pilX 3868949..3869767 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  JWB57_RS18875 (JWB57_01485) pilY1 3869779..3873633 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  JWB57_RS18880 (JWB57_01490) pilY2 3873644..3874126 (+) 483 WP_001046489.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JWB57_RS18885 (JWB57_01495) pilE 3874123..3874548 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene
  JWB57_RS18890 (JWB57_01500) rpsP 3874695..3874946 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  JWB57_RS18895 (JWB57_01505) rimM 3874966..3875514 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  JWB57_RS18900 (JWB57_01510) trmD 3875560..3876300 (+) 741 WP_000464595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  JWB57_RS18905 (JWB57_01515) rplS 3876508..3876876 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  JWB57_RS18910 (JWB57_01520) - 3876928..3877869 (-) 942 WP_085916958.1 triacylglycerol lipase -
  JWB57_RS18915 (JWB57_01525) - 3877984..3879015 (-) 1032 WP_001189459.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17657.94 Da        Isoelectric Point: 8.4737

>NTDB_id=539422 JWB57_RS18880 WP_001046489.1 3873644..3874126(+) (pilY2) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
MNKYYILRFNQGFTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=539422 JWB57_RS18880 WP_001046489.1 3873644..3874126(+) (pilY2) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
ATGAATAAGTACTACATTTTACGGTTCAATCAGGGTTTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZLV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

96.25

100

0.963
  comE Acinetobacter baylyi ADP1

41.86

100

0.45