Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JWB57_RS16365 Genome accession   NZ_CP070358
Coordinates   3338323..3339453 (+) Length   376 a.a.
NCBI ID   WP_001991425.1    Uniprot ID   A0A0J1A8J0
Organism   Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3333323..3344453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWB57_RS16340 (JWB57_18315) - 3333583..3333789 (-) 207 WP_000182542.1 hypothetical protein -
  JWB57_RS16345 (JWB57_18320) - 3333843..3335957 (-) 2115 WP_001120674.1 TonB-dependent copper receptor -
  JWB57_RS16350 (JWB57_18325) - 3336030..3336458 (-) 429 WP_000231981.1 DUF2946 family protein -
  JWB57_RS16355 (JWB57_18330) def 3336495..3337025 (-) 531 WP_001196539.1 peptide deformylase -
  JWB57_RS16360 (JWB57_18335) tsaP 3337148..3338302 (+) 1155 WP_000755285.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  JWB57_RS16365 (JWB57_18340) dprA 3338323..3339453 (+) 1131 WP_001991425.1 DNA-processing protein DprA Machinery gene
  JWB57_RS16370 (JWB57_18345) - 3339504..3340073 (+) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  JWB57_RS16375 (JWB57_18350) - 3340466..3341386 (-) 921 WP_001994180.1 DMT family transporter -
  JWB57_RS16380 (JWB57_18355) - 3341492..3342142 (-) 651 WP_012300783.1 TetR/AcrR family transcriptional regulator -
  JWB57_RS16385 (JWB57_18360) - 3342279..3343493 (+) 1215 WP_000372838.1 MFS transporter -
  JWB57_RS16390 (JWB57_18365) - 3343515..3344279 (+) 765 WP_000786955.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41843.48 Da        Isoelectric Point: 6.7530

>NTDB_id=539408 JWB57_RS16365 WP_001991425.1 3338323..3339453(+) (dprA) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
VQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQKQTKEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=539408 JWB57_RS16365 WP_001991425.1 3338323..3339453(+) (dprA) [Acinetobacter baumannii strain AB5075-VUB-itrA::ISAba13]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGACTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGTGTAAGTGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAGATTGCGATTGTCGGTAGTCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCTTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAATGGCGCCATTATTACGGAGTTTTTACCGGGTACAC
CACCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCAGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAAACAAACTAAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGATCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTGCC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1A8J0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

97.34

100

0.973
  dprA Acinetobacter baumannii strain A118

97.074

100

0.971
  dprA Acinetobacter baylyi ADP1

70.942

100

0.721
  dprA Vibrio cholerae strain A1552

43.243

88.564

0.383