Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   JVX91_RS10165 Genome accession   NZ_CP070356
Coordinates   2185498..2186841 (-) Length   447 a.a.
NCBI ID   WP_205339109.1    Uniprot ID   -
Organism   Pseudomonas sp. PDNC002     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2180498..2191841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX91_RS10135 (JVX91_10135) - 2181094..2181696 (-) 603 WP_240201721.1 PilX N-terminal domain-containing pilus assembly protein -
  JVX91_RS10140 (JVX91_10140) - 2181693..2182505 (-) 813 WP_205339105.1 PilW family protein -
  JVX91_RS10145 (JVX91_10145) pilV 2182515..2183015 (-) 501 WP_205339106.1 type IV pilus modification protein PilV Machinery gene
  JVX91_RS10150 (JVX91_10150) - 2183024..2183515 (-) 492 WP_205339976.1 GspH/FimT family protein -
  JVX91_RS10155 (JVX91_10155) - 2183667..2184179 (-) 513 WP_205339107.1 GspH/FimT family pseudopilin -
  JVX91_RS10160 (JVX91_10160) thiO 2184375..2185484 (+) 1110 WP_205339108.1 glycine oxidase ThiO -
  JVX91_RS10165 (JVX91_10165) pilR 2185498..2186841 (-) 1344 WP_205339109.1 sigma-54 dependent transcriptional regulator Regulator
  JVX91_RS10170 (JVX91_10170) pilS 2186851..2188440 (-) 1590 WP_205339110.1 ATP-binding protein Regulator
  JVX91_RS10175 (JVX91_10175) - 2188430..2188666 (-) 237 WP_205339111.1 PP0621 family protein -
  JVX91_RS10180 (JVX91_10180) - 2188817..2189842 (-) 1026 WP_205339112.1 outer membrane protein assembly factor BamD -
  JVX91_RS10185 (JVX91_10185) rluD 2189990..2190949 (+) 960 WP_205339113.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JVX91_RS10190 (JVX91_10190) pgeF 2190946..2191671 (+) 726 WP_205339114.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49810.97 Da        Isoelectric Point: 6.0472

>NTDB_id=539362 JVX91_RS10165 WP_205339109.1 2185498..2186841(-) (pilR) [Pseudomonas sp. PDNC002]
MSTSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARDFLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQMPV
AMITAFGSLDTAVQALKAGAFDFLTKPVDLGRLRELVHSALRLRSPGAEEAPVDNRLLGDSPPMRTLRNQVAKLARSQAP
VYISGESGSGKELVARLIHEQGPRENNTFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKLGLFQAANGGTLFLDEVAD
LPLPMQVKLLRAIQEKAVRAVGGQQEVSVDVRVLSATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTD
RMLKRLSGDSGLAAASVSPDALEKLKSYRFPGNVRELENMLERAYTLCENDVIQPHDLRLADAGSPDNGGEASLAQIDNL
EDYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=539362 JVX91_RS10165 WP_205339109.1 2185498..2186841(-) (pilR) [Pseudomonas sp. PDNC002]
ATGAGCACGAGTCGCCAAAAAGCCCTGATCGTCGATGACGAACCCGATATCCGCGAGTTGCTGGAAATCACCCTGGGGCG
CATGAAGCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGACTTTCTGGCGCGCGAACCTTTCGACTTCTGCC
TGACCGACATGCGCCTGCCCGACGGCACGGGGCTGGACCTCGTGCAGTACATCCAGCAGCGCCATCCGCAGATGCCAGTG
GCGATGATCACCGCCTTCGGCAGCCTGGATACCGCCGTCCAGGCGCTCAAGGCCGGTGCTTTCGACTTCCTGACCAAGCC
GGTCGACCTCGGCCGCCTGCGCGAGCTGGTGCATTCCGCCCTGCGACTGCGCTCGCCGGGCGCCGAAGAAGCACCTGTGG
ATAACCGCCTGCTCGGCGACTCGCCGCCCATGCGCACCCTGCGCAACCAGGTCGCCAAGCTCGCCCGCAGCCAGGCGCCG
GTGTATATCAGCGGCGAATCCGGCAGCGGCAAGGAACTGGTAGCCCGGCTCATCCACGAGCAAGGGCCGCGGGAGAACAA
CACGTTCGTTCCAGTGAACTGCGGCGCCATTCCCTCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCT
TCACCGGCGCCGTGGAGGACAAGCTCGGCCTGTTCCAGGCGGCCAATGGCGGCACGCTGTTCCTCGACGAGGTCGCCGAC
CTGCCGTTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCCGTGGGTGGCCAACAGGAAGT
CTCGGTGGACGTACGTGTCCTGAGCGCCACGCACAAGGACCTGGCCGCGGAAGTCGCCGCCGGCCGCTTCCGCCAGGACC
TCTACTACCGGCTCAACGTCATCGAGTTGCGCGTACCGCCGCTGCGCGAACGCCGCGAAGACATCCCGCTGCTCACCGAC
CGCATGCTCAAGCGCCTGTCCGGCGATAGCGGCCTGGCGGCGGCCTCGGTGAGTCCCGATGCCCTGGAAAAGCTGAAGAG
CTACCGCTTCCCAGGCAACGTGCGCGAGCTGGAGAACATGCTGGAGCGCGCCTACACACTGTGCGAGAACGATGTCATCC
AGCCCCACGATCTGCGCCTGGCGGACGCCGGAAGCCCCGACAACGGTGGCGAAGCGAGCCTGGCGCAGATCGACAACCTC
GAAGACTACCTCGAGGACATCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACCGCGGCGGC
ACAACGCCTCGGCCTGACCTTCCGCTCGATGCGCTATCGCCTGAAGAAACTGGGGATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.514

99.329

0.879
  pilR Acinetobacter baumannii strain A118

47.752

100

0.499