Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   JVX91_RS10170 Genome accession   NZ_CP070356
Coordinates   2186851..2188440 (-) Length   529 a.a.
NCBI ID   WP_205339110.1    Uniprot ID   -
Organism   Pseudomonas sp. PDNC002     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2181851..2193440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX91_RS10145 (JVX91_10145) pilV 2182515..2183015 (-) 501 WP_205339106.1 type IV pilus modification protein PilV Machinery gene
  JVX91_RS10150 (JVX91_10150) - 2183024..2183515 (-) 492 WP_205339976.1 GspH/FimT family protein -
  JVX91_RS10155 (JVX91_10155) - 2183667..2184179 (-) 513 WP_205339107.1 GspH/FimT family pseudopilin -
  JVX91_RS10160 (JVX91_10160) thiO 2184375..2185484 (+) 1110 WP_205339108.1 glycine oxidase ThiO -
  JVX91_RS10165 (JVX91_10165) pilR 2185498..2186841 (-) 1344 WP_205339109.1 sigma-54 dependent transcriptional regulator Regulator
  JVX91_RS10170 (JVX91_10170) pilS 2186851..2188440 (-) 1590 WP_205339110.1 ATP-binding protein Regulator
  JVX91_RS10175 (JVX91_10175) - 2188430..2188666 (-) 237 WP_205339111.1 PP0621 family protein -
  JVX91_RS10180 (JVX91_10180) - 2188817..2189842 (-) 1026 WP_205339112.1 outer membrane protein assembly factor BamD -
  JVX91_RS10185 (JVX91_10185) rluD 2189990..2190949 (+) 960 WP_205339113.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JVX91_RS10190 (JVX91_10190) pgeF 2190946..2191671 (+) 726 WP_205339114.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58534.00 Da        Isoelectric Point: 8.9519

>NTDB_id=539363 JVX91_RS10170 WP_205339110.1 2186851..2188440(-) (pilS) [Pseudomonas sp. PDNC002]
MAAEGISLTGQGLRVLRLYHLYRLTIGLVLVLLISSSLDDDLLKLAHPSLFHVGCWIYLVINILIAVLMPTPRQLLPLFI
LAALDVILLSGLFYTAGGIPSGIGNLMVIAVAIANILLRGRIGLLIAAIAAIGLIYLTFYLSLSQPTAINHYVQAGGLGA
LSFASALLIQALARRQQIVENIAEQRATTVANLEELNALILQRMRTGILVLGDRHRVLLANQSATALLGGQELAGQSLTL
HSPHLINSLQQWQQNPALRPPSMQLLESGPTVQPSFIPLRRGNEQHILMFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLLESEELDPPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRFAGELREGLRNGQ
QIHVETGQGTVQTRMDPHQLTQVLTNLVQNGLRYSTQKNGVGQVWLKLFRDRETDLPVLEVLDDGPGIAAEQRGKLFEPF
FTTESKGTGLGLYISRELCESNQARLDYKTREEGGSCFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=539363 JVX91_RS10170 WP_205339110.1 2186851..2188440(-) (pilS) [Pseudomonas sp. PDNC002]
GTGGCCGCTGAGGGCATCTCGCTTACCGGACAGGGCCTGCGCGTCCTGCGCCTGTACCACCTGTATCGCCTTACCATCGG
CCTGGTATTGGTGCTGCTGATTTCCAGCAGCCTGGACGACGACCTCCTCAAGCTGGCCCATCCCAGCCTGTTCCATGTCG
GTTGCTGGATTTACCTCGTCATCAACATCCTGATCGCGGTACTGATGCCCACACCGCGCCAACTGCTGCCTCTATTCATC
CTGGCGGCGTTGGACGTAATCCTGCTCAGCGGCCTGTTCTATACCGCCGGCGGCATTCCCAGCGGAATCGGCAACCTGAT
GGTGATCGCCGTCGCCATCGCCAACATCCTGCTGCGCGGACGGATCGGCCTGCTGATCGCGGCGATTGCCGCCATCGGCC
TGATCTACCTGACCTTCTACCTGAGCCTCAGCCAGCCCACAGCGATCAATCACTACGTGCAGGCTGGCGGTCTGGGTGCG
CTCAGCTTCGCCTCCGCGCTGCTGATCCAGGCTCTGGCGCGGCGCCAGCAGATCGTCGAGAACATCGCCGAACAACGCGC
CACTACCGTCGCCAATCTCGAAGAGCTCAACGCACTGATCCTCCAGCGCATGCGCACCGGCATTCTGGTGCTGGGCGACC
GCCATCGCGTCCTGCTGGCCAATCAGAGCGCAACTGCCCTGCTGGGCGGCCAGGAGCTGGCGGGCCAATCCCTGACGCTG
CACAGCCCGCACCTGATCAACAGCCTGCAGCAATGGCAGCAGAATCCAGCCCTGCGTCCACCCAGCATGCAACTGCTGGA
GTCGGGCCCGACCGTTCAACCAAGCTTCATTCCCCTGCGCCGCGGCAACGAGCAGCATATCCTGATGTTCCTCGAGGACA
TCTCGCAGATCGCCCAGCAGGCGCAGCAACTCAAGCTTGCCGCGCTGGGACGACTGACCGCCGGCATCGCCCACGAGATC
CGCAATCCACTTGGCGCGATCAGCCACGCCGCGCAACTGCTGCTGGAGTCCGAAGAACTCGACCCGCCGGATCGCCGCCT
GACGCAGATCATCCAGGACCAGTCGCGGCGCATGAACCTGGTCATCGAGAACGTGCTGCAGCTGTCCCGGCGGCGGCAGT
CCGAGCCGCAGCTCCTGGACCTCAAGTATTGGCTGCACCGCTTCGCCGGCGAGCTGCGCGAAGGCCTGCGCAACGGCCAG
CAGATCCATGTGGAAACCGGCCAGGGCACAGTGCAGACGCGCATGGACCCGCATCAGTTGACCCAGGTACTGACCAACCT
GGTCCAGAATGGGTTACGGTACAGCACTCAGAAAAATGGCGTCGGCCAGGTCTGGCTCAAGCTCTTCCGCGACCGCGAGA
CTGATCTGCCGGTGCTGGAAGTGCTCGACGACGGCCCCGGTATCGCCGCCGAACAGCGGGGGAAGCTGTTCGAGCCGTTC
TTCACCACTGAAAGCAAGGGCACCGGACTGGGCCTGTACATCTCCAGGGAGCTGTGCGAAAGCAACCAGGCACGGCTGGA
CTACAAGACGCGCGAGGAAGGCGGCAGCTGCTTCCGTATCACCTTCGCCCACCCGCGCAAACAAAGCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

72.075

100

0.722