Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   JVX91_RS10145 Genome accession   NZ_CP070356
Coordinates   2182515..2183015 (-) Length   166 a.a.
NCBI ID   WP_205339106.1    Uniprot ID   -
Organism   Pseudomonas sp. PDNC002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2177515..2188015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX91_RS10135 (JVX91_10135) - 2181094..2181696 (-) 603 WP_240201721.1 PilX N-terminal domain-containing pilus assembly protein -
  JVX91_RS10140 (JVX91_10140) - 2181693..2182505 (-) 813 WP_205339105.1 PilW family protein -
  JVX91_RS10145 (JVX91_10145) pilV 2182515..2183015 (-) 501 WP_205339106.1 type IV pilus modification protein PilV Machinery gene
  JVX91_RS10150 (JVX91_10150) - 2183024..2183515 (-) 492 WP_205339976.1 GspH/FimT family protein -
  JVX91_RS10155 (JVX91_10155) - 2183667..2184179 (-) 513 WP_205339107.1 GspH/FimT family pseudopilin -
  JVX91_RS10160 (JVX91_10160) thiO 2184375..2185484 (+) 1110 WP_205339108.1 glycine oxidase ThiO -
  JVX91_RS10165 (JVX91_10165) pilR 2185498..2186841 (-) 1344 WP_205339109.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17455.95 Da        Isoelectric Point: 7.4202

>NTDB_id=539361 JVX91_RS10145 WP_205339106.1 2182515..2183015(-) (pilV) [Pseudomonas sp. PDNC002]
MKNTRGFSMIEVLITLVLVCIGVLGMVALQGRTVSYTQDSVQRNTAAALANDLVEMIRANPTGLPASSGFYKAANSAFPD
APTAGCGSTTNVPAEQLACWGQKAGKLLPGASSLLTSDFYVCRSLNANSCGNGSAVEIQLAWTVKAGECMDNSTATTCYY
RLRTEI

Nucleotide


Download         Length: 501 bp        

>NTDB_id=539361 JVX91_RS10145 WP_205339106.1 2182515..2183015(-) (pilV) [Pseudomonas sp. PDNC002]
ATGAAGAACACTCGCGGCTTCAGCATGATCGAAGTACTCATCACACTGGTGCTGGTCTGCATCGGCGTACTTGGCATGGT
TGCTCTTCAAGGGCGCACCGTGAGCTACACCCAGGATTCGGTGCAGCGCAATACCGCGGCGGCGCTGGCCAACGACCTCG
TCGAAATGATTCGCGCCAATCCCACGGGTTTGCCTGCCAGCTCGGGCTTCTACAAGGCAGCCAACAGCGCCTTCCCCGAC
GCGCCAACTGCCGGCTGCGGCAGCACCACCAACGTGCCGGCGGAACAACTGGCCTGCTGGGGGCAGAAAGCCGGAAAACT
GCTGCCGGGCGCCAGCTCGTTGTTGACCAGTGACTTCTACGTTTGCCGCTCGTTGAACGCCAACAGCTGCGGTAACGGCT
CCGCCGTGGAAATCCAGCTGGCGTGGACGGTGAAGGCAGGCGAGTGCATGGACAACAGCACAGCCACGACCTGTTACTAC
CGCCTGCGCACTGAAATCTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

47.429

100

0.5