Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JVX91_RS08730 Genome accession   NZ_CP070356
Coordinates   1873873..1874373 (+) Length   166 a.a.
NCBI ID   WP_081517086.1    Uniprot ID   -
Organism   Pseudomonas sp. PDNC002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1868873..1879373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX91_RS08715 (JVX91_08715) bfr 1868885..1869349 (+) 465 WP_138520039.1 bacterioferritin -
  JVX91_RS08720 (JVX91_08720) uvrA 1869417..1872251 (-) 2835 WP_205338868.1 excinuclease ABC subunit UvrA -
  JVX91_RS08725 (JVX91_08725) - 1872466..1873854 (+) 1389 WP_169942317.1 MFS transporter -
  JVX91_RS08730 (JVX91_08730) ssb 1873873..1874373 (+) 501 WP_081517086.1 single-stranded DNA-binding protein Machinery gene
  JVX91_RS08735 (JVX91_08735) - 1874550..1874738 (+) 189 WP_205338869.1 hypothetical protein -
  JVX91_RS08740 (JVX91_08740) - 1874936..1877380 (-) 2445 WP_205338870.1 TonB-dependent siderophore receptor -
  JVX91_RS08745 (JVX91_08745) - 1877746..1878720 (-) 975 WP_205338871.1 FecR family protein -
  JVX91_RS08750 (JVX91_08750) - 1878717..1879214 (-) 498 WP_205338872.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18477.40 Da        Isoelectric Point: 5.2781

>NTDB_id=539360 JVX91_RS08730 WP_081517086.1 1873873..1874373(+) (ssb) [Pseudomonas sp. PDNC002]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIVAEYVRKGSQIYVE
GSLRTRKWQGQDGQDKYTTEIVVDINGNMQLLGGRPGAGGDDAPRAPREPQQQRPQQAQRPAPQQQSQPAPQPAPDYDSF
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=539360 JVX91_RS08730 WP_081517086.1 1873873..1874373(+) (ssb) [Pseudomonas sp. PDNC002]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTGGGTAACGTCGGTGGCGATCCGGAAACCCGTTACATGCCCAACGGCAA
CGCGGTGACCAACGTCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGTACCGAGT
GGCACCGCGTGGTGTTCTTCGGTCGCCTGGCGGAGATCGTCGCCGAGTACGTGCGCAAGGGTTCGCAGATCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGACAAGTACACCACCGAAATCGTGGTCGACATCAACGG
CAACATGCAGCTGCTCGGCGGCCGTCCGGGCGCCGGTGGTGACGACGCTCCGCGCGCTCCCCGCGAGCCGCAACAGCAGC
GTCCGCAGCAGGCCCAGCGCCCTGCGCCGCAGCAGCAGTCCCAGCCCGCGCCGCAACCGGCTCCGGACTACGACAGCTTC
GACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.714

100

0.608
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.554
  ssb Neisseria gonorrhoeae MS11

44.633

100

0.476
  ssb Neisseria meningitidis MC58

44.068

100

0.47