Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JVX96_RS08090 Genome accession   NZ_CP070343
Coordinates   1686657..1687211 (+) Length   184 a.a.
NCBI ID   WP_106936004.1    Uniprot ID   -
Organism   Variovorax sp. PDNC026     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1681657..1692211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX96_RS08080 (JVX96_08080) uvrA 1682020..1685019 (-) 3000 WP_199851975.1 excinuclease ABC subunit UvrA -
  JVX96_RS08085 (JVX96_08085) - 1685168..1686550 (-) 1383 WP_106936005.1 chloride channel protein -
  JVX96_RS08090 (JVX96_08090) ssb 1686657..1687211 (+) 555 WP_106936004.1 single-stranded DNA-binding protein Machinery gene
  JVX96_RS08095 (JVX96_08095) - 1687294..1688007 (-) 714 WP_106936003.1 YebC/PmpR family DNA-binding transcriptional regulator -
  JVX96_RS08100 (JVX96_08100) - 1688167..1689900 (+) 1734 WP_106936002.1 M14 family zinc carboxypeptidase -
  JVX96_RS08105 (JVX96_08105) - 1689884..1690801 (-) 918 WP_081270737.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19424.33 Da        Isoelectric Point: 5.9554

>NTDB_id=539255 JVX96_RS08090 WP_106936004.1 1686657..1687211(+) (ssb) [Variovorax sp. PDNC026]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGYSQGGNGGGGGGGYAPRAPAAAPRAP
APAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=539255 JVX96_RS08090 WP_106936004.1 1686657..1687211(+) (ssb) [Variovorax sp. PDNC026]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGGACCTTCCCGAGCGGCGATCA
GGTCGCGAACGTCACAGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAATGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTCGGCAGCCGCCAGGGCCAGGGCGGCCCCTCGGGCGGTCCCGAGGACGACGGCGGCTACTCGCAAGGTGGCGGCGGTG
GCTACTCGCAGGGCGGCAACGGCGGTGGCGGCGGCGGCGGATACGCACCCCGCGCACCCGCGGCGGCTCCGCGTGCTCCG
GCACCGGCTCCGCGCCAGGCACCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.577

100

0.554
  ssb Vibrio cholerae strain A1552

47.179

100

0.5
  ssb Neisseria gonorrhoeae MS11

46.448

99.457

0.462
  ssb Neisseria meningitidis MC58

44.809

99.457

0.446