Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JQN76_RS13950 Genome accession   NZ_CP070305
Coordinates   2813749..2814219 (-) Length   156 a.a.
NCBI ID   WP_000934769.1    Uniprot ID   -
Organism   Staphylococcus sp. SM3655     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2808749..2819219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN76_RS13890 (JQN76_13890) - 2809084..2809233 (-) 150 WP_000595267.1 hypothetical protein -
  JQN76_RS13895 (JQN76_13895) - 2809230..2809436 (-) 207 WP_000195810.1 DUF1381 domain-containing protein -
  JQN76_RS13900 (JQN76_13900) - 2809473..2810009 (-) 537 WP_000185669.1 dUTP diphosphatase -
  JQN76_RS13905 (JQN76_13905) - 2810002..2810250 (-) 249 WP_001065083.1 DUF1024 family protein -
  JQN76_RS13910 (JQN76_13910) - 2810243..2810527 (-) 285 WP_001105621.1 hypothetical protein -
  JQN76_RS13915 (JQN76_13915) - 2810524..2810973 (-) 450 WP_000982708.1 YopX family protein -
  JQN76_RS14235 - 2810970..2811164 (-) 195 WP_000983954.1 hypothetical protein -
  JQN76_RS13920 (JQN76_13920) - 2811161..2811547 (-) 387 WP_000693615.1 hypothetical protein -
  JQN76_RS13925 (JQN76_13925) - 2811561..2811803 (-) 243 WP_000131377.1 phi PVL orf 51-like protein -
  JQN76_RS13930 (JQN76_13930) - 2811807..2812175 (-) 369 WP_000101270.1 SA1788 family PVL leukocidin-associated protein -
  JQN76_RS13935 (JQN76_13935) - 2812188..2812592 (-) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  JQN76_RS13940 (JQN76_13940) - 2812601..2812819 (-) 219 WP_000338528.1 hypothetical protein -
  JQN76_RS13945 (JQN76_13945) - 2812826..2813719 (-) 894 WP_000148329.1 DnaD domain-containing protein -
  JQN76_RS13950 (JQN76_13950) ssbA 2813749..2814219 (-) 471 WP_000934769.1 single-stranded DNA-binding protein Machinery gene
  JQN76_RS13955 (JQN76_13955) - 2814220..2814837 (-) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  JQN76_RS13960 (JQN76_13960) - 2814918..2815838 (-) 921 WP_000138481.1 recombinase RecT -
  JQN76_RS13965 (JQN76_13965) - 2815840..2817795 (-) 1956 WP_001813910.1 AAA family ATPase -
  JQN76_RS13970 (JQN76_13970) - 2817792..2818055 (-) 264 WP_001205732.1 hypothetical protein -
  JQN76_RS13975 (JQN76_13975) - 2818064..2818324 (-) 261 WP_000291488.1 DUF1108 family protein -
  JQN76_RS13980 (JQN76_13980) - 2818417..2818578 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  JQN76_RS13985 (JQN76_13985) - 2818575..2818895 (-) 321 WP_001815221.1 DUF771 domain-containing protein -
  JQN76_RS13990 (JQN76_13990) - 2818954..2819181 (+) 228 WP_000801108.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17671.55 Da        Isoelectric Point: 5.2672

>NTDB_id=539125 JQN76_RS13950 WP_000934769.1 2813749..2814219(-) (ssbA) [Staphylococcus sp. SM3655]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=539125 JQN76_RS13950 WP_000934769.1 2813749..2814219(-) (ssbA) [Staphylococcus sp. SM3655]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365