Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQN73_RS10365 Genome accession   NZ_CP070304
Coordinates   2434295..2434852 (-) Length   185 a.a.
NCBI ID   WP_205322939.1    Uniprot ID   -
Organism   Glaciimonas sp. PAMC28666     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2429295..2439852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN73_RS10355 (JQN73_10355) - 2430538..2431923 (-) 1386 WP_240162500.1 HlyD family type I secretion periplasmic adaptor subunit -
  JQN73_RS10360 (JQN73_10360) - 2431930..2433690 (-) 1761 WP_205322938.1 type I secretion system permease/ATPase -
  JQN73_RS10365 (JQN73_10365) ssb 2434295..2434852 (-) 558 WP_205322939.1 single-stranded DNA-binding protein Machinery gene
  JQN73_RS10370 (JQN73_10370) - 2435086..2435979 (-) 894 WP_205322940.1 dienelactone hydrolase family protein -
  JQN73_RS10375 (JQN73_10375) - 2436374..2437309 (+) 936 WP_205322941.1 alpha/beta hydrolase -
  JQN73_RS10380 (JQN73_10380) - 2437490..2437780 (+) 291 WP_205322942.1 CopG family ribbon-helix-helix protein -
  JQN73_RS10385 (JQN73_10385) - 2437777..2438058 (+) 282 WP_240162501.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 19986.00 Da        Isoelectric Point: 5.9649

>NTDB_id=539073 JQN73_RS10365 WP_205322939.1 2434295..2434852(-) (ssb) [Glaciimonas sp. PAMC28666]
MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNSGEKKELTEWHRITFYRKLAEIAGQYLKKGSQIYIEG
RLQTRKWQDKEGVERYTTEIIADSMQMLGSRQGQGGSSMDDGGYDGGDAPRQSSGGNAGGGSSYNNAPSGNAPSRPAQAP
PSRPAQAPASRPAPNFSDMDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=539073 JQN73_RS10365 WP_205322939.1 2434295..2434852(-) (ssb) [Glaciimonas sp. PAMC28666]
ATGGCGTCGGTCAATAAAGTCATCATCGTCGGTAATCTGGGCCGCGATCCGGAAACCCGCTACATGCCTAACGGCGAAGC
GGTAACAAACATCGCCGTAGCGACGACGGAAAGCTGGAAAGACAAGAATAGTGGTGAAAAGAAAGAATTGACCGAATGGC
ATCGTATTACTTTCTATCGAAAGTTAGCTGAAATCGCCGGCCAGTATCTGAAAAAAGGCTCGCAAATCTATATCGAAGGT
CGTCTGCAAACACGCAAATGGCAAGATAAAGAAGGCGTCGAGCGCTACACCACCGAAATCATCGCAGACTCCATGCAAAT
GTTGGGAAGTCGTCAAGGTCAGGGTGGTTCCTCGATGGATGACGGCGGTTACGATGGCGGCGACGCACCGCGCCAAAGCA
GCGGTGGCAACGCTGGTGGTGGCTCGTCATACAACAATGCGCCGTCTGGTAATGCCCCTTCCCGTCCCGCGCAAGCCCCT
CCATCCCGTCCTGCGCAAGCGCCCGCTTCACGGCCTGCGCCAAATTTCTCGGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.158

100

0.546
  ssb Vibrio cholerae strain A1552

49.231

100

0.519
  ssb Neisseria gonorrhoeae MS11

51.366

98.919

0.508
  ssb Neisseria meningitidis MC58

50.82

98.919

0.503