Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JRC43_RS21480 Genome accession   NZ_CP070292
Coordinates   4398879..4399415 (-) Length   178 a.a.
NCBI ID   WP_000168310.1    Uniprot ID   A0A7U8WHF9
Organism   Escherichia albertii strain Sample 166     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4393879..4404415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRC43_RS21460 (JRC43_21460) soxR 4395240..4395704 (-) 465 WP_000412438.1 redox-sensitive transcriptional activator SoxR -
  JRC43_RS21465 (JRC43_21465) soxS 4395790..4396113 (+) 324 WP_000019352.1 superoxide response transcriptional regulator SoxS -
  JRC43_RS21470 (JRC43_21470) - 4396116..4397702 (-) 1587 WP_025237868.1 EAL domain-containing protein -
  JRC43_RS21475 (JRC43_21475) - 4398150..4398431 (+) 282 WP_010338933.1 YjcB family protein -
  JRC43_RS21480 (JRC43_21480) ssb 4398879..4399415 (-) 537 WP_000168310.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JRC43_RS21485 (JRC43_21485) uvrA 4399667..4402489 (+) 2823 WP_025237869.1 excinuclease ABC subunit UvrA -
  JRC43_RS21490 (JRC43_21490) - 4402867..4403223 (-) 357 WP_000155670.1 MmcQ/YjbR family DNA-binding protein -
  JRC43_RS21495 (JRC43_21495) - 4403227..4403643 (-) 417 WP_000270382.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19005.02 Da        Isoelectric Point: 5.2358

>NTDB_id=539033 JRC43_RS21480 WP_000168310.1 4398879..4399415(-) (ssb) [Escherichia albertii strain Sample 166]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQSGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=539033 JRC43_RS21480 WP_000168310.1 4398879..4399415(-) (ssb) [Escherichia albertii strain Sample 166]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCAGCGAATATCTGCGCAAAGGTTCCCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCCAGGATCGCTACACGACAGAAGTTGTCGTAAACGTCGG
CGGCACTATGCAGATGTTGGGTGGGCGTCAGAGTGGTGGCGCTCCGGCTGGCGGCAATATCGGTGGCGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAACCGCCGATGGACTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U8WHF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

58.47

100

0.601
  ssb Neisseria meningitidis MC58

48.619

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.619

100

0.494