Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JRC45_RS21430 Genome accession   NZ_CP070287
Coordinates   4330369..4330905 (-) Length   178 a.a.
NCBI ID   WP_000168311.1    Uniprot ID   -
Organism   Escherichia albertii strain Sample 168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4325369..4335905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRC45_RS21410 (JRC45_21410) soxR 4326902..4327366 (-) 465 WP_000412439.1 redox-sensitive transcriptional activator SoxR -
  JRC45_RS21415 (JRC45_21415) soxS 4327452..4327775 (+) 324 WP_000019352.1 superoxide response transcriptional regulator SoxS -
  JRC45_RS21420 (JRC45_21420) - 4327778..4329364 (-) 1587 WP_000019704.1 EAL domain-containing protein -
  JRC45_RS21425 (JRC45_21425) - 4329812..4330093 (+) 282 WP_010338933.1 YjcB family protein -
  JRC45_RS21430 (JRC45_21430) ssb 4330369..4330905 (-) 537 WP_000168311.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JRC45_RS21435 (JRC45_21435) uvrA 4331157..4333979 (+) 2823 WP_000357767.1 excinuclease ABC subunit UvrA -
  JRC45_RS21440 (JRC45_21440) - 4334013..4334369 (-) 357 WP_000155670.1 MmcQ/YjbR family DNA-binding protein -
  JRC45_RS21445 (JRC45_21445) - 4334373..4334789 (-) 417 WP_204628861.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JRC45_RS21450 (JRC45_21450) aphA 4334900..4335613 (-) 714 WP_001226934.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19035.05 Da        Isoelectric Point: 5.2358

>NTDB_id=538989 JRC45_RS21430 WP_000168311.1 4330369..4330905(-) (ssb) [Escherichia albertii strain Sample 168]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQSGGAPTGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=538989 JRC45_RS21430 WP_000168311.1 4330369..4330905(-) (ssb) [Escherichia albertii strain Sample 168]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCAGCGAATATCTGCGCAAAGGTTCCCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCTGGCCAGGATCGCTACACGACAGAAGTTGTCGTAAACGTCGG
CGGCACTATGCAGATGTTGGGTGGGCGTCAGAGTGGTGGCGCTCCGACTGGCGGCAATATCGGTGGCGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAACCGCCGATGGACTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.747
  ssb Glaesserella parasuis strain SC1401

58.47

100

0.601
  ssb Neisseria meningitidis MC58

48.619

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.619

100

0.494