Detailed information NTG0538904

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: LLUL021_RS11500
• Genome accession: NZ_CP070263
• Coordinates: 2263499..2263945 (-)
• Length: 148 a.a.
• NCBI ID: WP_029344525.1
• Uniprot ID: A0AAP4JUI5
• Organism: Lactococcus lactis subsp. lactis strain UL021
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2258499..2268945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLUL021_RS11475 (LLUL021_11435)	-	2260094..2260903 (-)	810	WP_014570791.1	metal ABC transporter permease	-
LLUL021_RS11480 (LLUL021_11440)	-	2260896..2261633 (-)	738	WP_058221575.1	metal ABC transporter ATP-binding protein	-
LLUL021_RS11485 (LLUL021_11445)	-	2261810..2262652 (-)	843	WP_003129990.1	metal ABC transporter substrate-binding protein	-
LLUL021_RS11490 (LLUL021_11450)	-	2262649..2263086 (-)	438	WP_003129992.1	zinc-dependent MarR family transcriptional regulator	-
LLUL021_RS11495 (LLUL021_11455)	comGG	2263176..2263460 (-)	285	WP_003129993.1	competence type IV pilus minor pilin ComGG	Machinery gene
LLUL021_RS11500 (LLUL021_11460)	comGF	2263499..2263945 (-)	447	WP_029344525.1	competence type IV pilus minor pilin ComGF	Machinery gene
LLUL021_RS11505 (LLUL021_11465)	comGE	2263908..2264204 (-)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
LLUL021_RS11510 (LLUL021_11470)	comGD	2264176..2264607 (-)	432	WP_080585155.1	competence type IV pilus minor pilin ComGD	Machinery gene
LLUL021_RS11515 (LLUL021_11475)	comGC	2264567..2264863 (-)	297	WP_212715809.1	competence type IV pilus major pilin ComGC	Machinery gene
LLUL021_RS11520 (LLUL021_11480)	-	2265025..2265804 (-)	780	WP_137016631.1	peptidoglycan amidohydrolase family protein	-
LLUL021_RS11525 (LLUL021_11485)	-	2265804..2266091 (-)	288	WP_137016629.1	phage holin	-
LLUL021_RS11530 (LLUL021_11490)	-	2266104..2266454 (-)	351	WP_014570798.1	hypothetical protein	-
LLUL021_RS11535 (LLUL021_11495)	-	2266467..2266703 (-)	237	WP_137016624.1	hypothetical protein	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17111.91 Da
• Isoelectric Point: 8.6780

>NTDB_id=538904 LLUL021_RS11500 WP_029344525.1 2263499..2263945(-) (comGF) [Lactococcus lactis subsp. lactis strain UL021]
MERKLCDLNFKVKAFTLLECLVALLAISGSVLVISGLTKMLKEQVAISQSDSIKDWQIFCQQMRFELSGTKLDRVEQNFL
YVTKDKKLRFGFMSDDFRKTDDKGQGYQPMLYDIKAAKIQATKNLITIRIDFNQGGERTFIYQFPEDT

Nucleotide

• Length: 447 bp

>NTDB_id=538904 LLUL021_RS11500 WP_029344525.1 2263499..2263945(-) (comGF) [Lactococcus lactis subsp. lactis strain UL021]
ATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAAT
TTCTGGTTCAGTCCTTGTCATCTCAGGTTTAACAAAGATGTTGAAAGAACAAGTGGCGATTAGTCAAAGTGATAGCATAA
AAGATTGGCAAATTTTCTGTCAGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAGGGTAGAACAGAATTTTCTG
TATGTAACTAAAGATAAAAAACTAAGGTTTGGTTTTATGAGTGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTA
TCAGCCAATGCTTTATGATATAAAAGCGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATC
AAGGAGGTGAAAGAACATTTATTTATCAATTTCCAGAAGATACGTAA

Domains

Predicted by InterProScan.

• Putative Competence protein ComGF (ComGF) (48-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	76.259	93.919	0.716
comYF	Streptococcus mutans UA140	48.227	95.27	0.459
comYF	Streptococcus mutans UA159	47.518	95.27	0.453
comGF/cglF	Streptococcus mitis SK321	43.066	92.568	0.399
comGF/cglF	Streptococcus pneumoniae Rx1	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae D39	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae R6	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae TIGR4	40.426	95.27	0.385
comGF/cglF	Streptococcus mitis NCTC 12261	41.606	92.568	0.385