Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLUL021_RS08840 Genome accession   NZ_CP070263
Coordinates   1790936..1791925 (-) Length   329 a.a.
NCBI ID   WP_014570680.1    Uniprot ID   A0A2X0PLY6
Organism   Lactococcus lactis subsp. lactis strain UL021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1785936..1796925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUL021_RS08825 (LLUL021_08805) - 1787302..1788228 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  LLUL021_RS08830 (LLUL021_08810) - 1788382..1789065 (-) 684 WP_010906108.1 O-methyltransferase -
  LLUL021_RS08835 (LLUL021_08815) pepF 1789068..1790873 (-) 1806 WP_032398794.1 oligoendopeptidase F Regulator
  LLUL021_RS08840 (LLUL021_08820) coiA 1790936..1791925 (-) 990 WP_014570680.1 competence protein CoiA Machinery gene
  LLUL021_RS08845 (LLUL021_08825) - 1791999..1793084 (-) 1086 WP_003130405.1 YdcF family protein -
  LLUL021_RS08850 (LLUL021_08830) - 1793246..1794070 (-) 825 WP_023164441.1 alpha/beta hydrolase -
  LLUL021_RS08855 (LLUL021_08835) - 1794285..1795706 (-) 1422 WP_003130403.1 NCS2 family permease -
  LLUL021_RS08860 (LLUL021_08840) - 1796013..1796849 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39454.98 Da        Isoelectric Point: 8.2932

>NTDB_id=538890 LLUL021_RS08840 WP_014570680.1 1790936..1791925(-) (coiA) [Lactococcus lactis subsp. lactis strain UL021]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDTIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKIQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFLINFQQNSFKEVYSPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=538890 LLUL021_RS08840 WP_014570680.1 1790936..1791925(-) (coiA) [Lactococcus lactis subsp. lactis strain UL021]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATACAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAAATTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATTCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X0PLY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.54

99.088

0.739
  coiA Streptococcus pneumoniae TIGR4

42.857

97.872

0.419
  coiA Streptococcus pneumoniae Rx1

42.857

97.872

0.419
  coiA Streptococcus pneumoniae D39

42.857

97.872

0.419
  coiA Streptococcus pneumoniae R6

42.857

97.872

0.419
  coiA Streptococcus mitis NCTC 12261

42.633

96.96

0.413