Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JTC67_RS12650 Genome accession   NZ_CP070229
Coordinates   2477833..2478369 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EC12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2472833..2483369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTC67_RS12630 (JTC67_12525) soxR 2474561..2475025 (-) 465 WP_024240165.1 redox-sensitive transcriptional activator SoxR -
  JTC67_RS12635 (JTC67_12530) soxS 2475111..2475434 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JTC67_RS12640 (JTC67_12535) pdeC 2475437..2477023 (-) 1587 WP_001314348.1 c-di-GMP phosphodiesterase PdeC -
  JTC67_RS12645 (JTC67_12540) yjcB 2477453..2477734 (+) 282 WP_001296643.1 YjcB family protein -
  JTC67_RS12650 (JTC67_12545) ssb 2477833..2478369 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JTC67_RS12655 (JTC67_12550) uvrA 2478624..2481446 (+) 2823 WP_001358030.1 excinuclease ABC subunit UvrA -
  JTC67_RS12660 (JTC67_12555) yjbR 2481481..2481837 (-) 357 WP_000155672.1 MmcQ/YjbR family DNA-binding protein -
  JTC67_RS12665 (JTC67_12560) yjbQ 2481841..2482257 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JTC67_RS12670 (JTC67_12565) aphA 2482368..2483081 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=538784 JTC67_RS12650 WP_000168305.1 2477833..2478369(-) (ssb) [Escherichia coli strain EC12]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=538784 JTC67_RS12650 WP_000168305.1 2477833..2478369(-) (ssb) [Escherichia coli strain EC12]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATT
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489