Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   STRIC_RS08320 Genome accession   NZ_AEUX02000007
Coordinates   126863..127546 (+) Length   227 a.a.
NCBI ID   WP_008089971.1    Uniprot ID   G5K4I2
Organism   Streptococcus ictaluri 707-05     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 121863..132546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRIC_RS08295 (STRIC_1697) - 122163..123563 (+) 1401 WP_008089870.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  STRIC_RS08300 (STRIC_1698) - 123563..123925 (+) 363 WP_008089664.1 S1 RNA-binding domain-containing protein -
  STRIC_RS08305 (STRIC_1699) cysK 123811..124773 (-) 963 Protein_119 cysteine synthase A -
  STRIC_RS08310 (STRIC_1700) - 124890..125531 (-) 642 WP_008090309.1 YigZ family protein -
  STRIC_RS08315 - 125587..126866 (+) 1280 Protein_121 DEAD/DEAH box helicase -
  STRIC_RS08320 (STRIC_1703) comFC/cflB 126863..127546 (+) 684 WP_008089971.1 ComF family protein Machinery gene
  STRIC_RS08325 (STRIC_1704) hpf 127603..128151 (+) 549 WP_008089825.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26621.94 Da        Isoelectric Point: 9.5906

>NTDB_id=53877 STRIC_RS08320 WP_008089971.1 126863..127546(+) (comFC/cflB) [Streptococcus ictaluri 707-05]
MRCLLCQESCRQELSLIDLFLFRNQKNPICTKCQLQFKKIDSTYCPSCYKPNQKSICQDCIDWKKKGYLPSHRALYAYDS
AMKEYFQKYKFQGDYILKKVFAKDIENLIKKNYSDYTIVPVPVSQVRLSERGFNQVSALLDETNCIYQNLFVRLDDSRQS
SKSKKERQIAEGTYYLNQTKELPQKILIFDDIYTTGNTIVSLKKNSVAMVARRLRVSLLHVKTCKFS

Nucleotide


Download         Length: 684 bp        

>NTDB_id=53877 STRIC_RS08320 WP_008089971.1 126863..127546(+) (comFC/cflB) [Streptococcus ictaluri 707-05]
ATGAGGTGCTTATTATGCCAAGAGAGCTGCAGACAAGAGCTTTCGTTGATTGACCTTTTTCTTTTTAGAAATCAAAAAAA
TCCGATTTGCACAAAATGCCAATTACAATTTAAAAAAATAGACTCTACTTATTGCCCTTCTTGCTATAAACCCAACCAAA
AATCAATTTGTCAAGATTGTATAGATTGGAAGAAAAAAGGTTATTTGCCAAGCCATCGTGCCTTATATGCTTATGATTCT
GCTATGAAAGAATATTTCCAGAAATACAAATTTCAAGGGGATTACATACTAAAAAAAGTTTTTGCTAAAGATATAGAAAA
TCTAATCAAGAAAAATTATTCCGATTACACCATAGTTCCAGTTCCTGTCAGTCAAGTGCGTTTATCAGAAAGAGGTTTTA
ATCAAGTGTCTGCTCTCTTGGATGAAACTAACTGTATCTATCAAAATCTCTTTGTAAGACTAGATGACAGTAGGCAATCA
AGTAAAAGTAAAAAAGAAAGACAAATAGCAGAAGGAACATATTATTTAAATCAAACAAAAGAGTTACCTCAAAAAATTCT
TATATTTGATGACATCTATACAACTGGAAATACCATTGTTTCCTTAAAAAAGAACTCAGTCGCTATGGTCGCAAGGAGGT
TAAGAGTCTCTCTATTGCACGTTAAAACTTGCAAATTTTCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5K4I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

41.176

89.868

0.37
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

89.868

0.37
  comFC/cflB Streptococcus pneumoniae Rx1

40.196

89.868

0.361
  comFC/cflB Streptococcus pneumoniae D39

40.196

89.868

0.361
  comFC/cflB Streptococcus pneumoniae R6

40.196

89.868

0.361
  comFC/cflB Streptococcus pneumoniae TIGR4

40.196

89.868

0.361

Multiple sequence alignment