Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JNX00_RS19410 Genome accession   NZ_CP070223
Coordinates   4121707..4122204 (+) Length   165 a.a.
NCBI ID   WP_070399447.1    Uniprot ID   A0A8I1QN06
Organism   Hydrogenophaga sp. YM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4116707..4127204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNX00_RS19395 (JNX00_19395) - 4117350..4118717 (+) 1368 WP_204743316.1 CoA-binding protein -
  JNX00_RS19400 (JNX00_19400) - 4118873..4120042 (+) 1170 WP_070399448.1 MFS transporter -
  JNX00_RS19405 (JNX00_19405) - 4120043..4121590 (-) 1548 WP_204743318.1 chloride channel protein -
  JNX00_RS19410 (JNX00_19410) ssb 4121707..4122204 (+) 498 WP_070399447.1 single-stranded DNA-binding protein Machinery gene
  JNX00_RS19415 (JNX00_19415) - 4122372..4123031 (+) 660 WP_070399446.1 response regulator transcription factor -
  JNX00_RS19420 (JNX00_19420) - 4123222..4123641 (+) 420 WP_204743320.1 hypothetical protein -
  JNX00_RS19425 (JNX00_19425) - 4123722..4124501 (-) 780 WP_139147058.1 hypothetical protein -
  JNX00_RS19430 (JNX00_19430) - 4124618..4126969 (+) 2352 WP_204743322.1 PAS domain S-box protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17641.73 Da        Isoelectric Point: 6.9856

>NTDB_id=538729 JNX00_RS19410 WP_070399447.1 4121707..4122204(+) (ssb) [Hydrogenophaga sp. YM1]
MASVNKVILVGNCGRDAEIRYLPSGQAVANVSIATSSRRKDRNTGETVEETQWHRVTFYDRLAEIAGEYVKKGRPLYVEG
RLKYGKYTDQGGVERNTVDIIATEMQLLGGREGMGGGDDGGAPPRAAAAPRAAAPAGRPAPSPRPAPAPARQPTGFDDMD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=538729 JNX00_RS19410 WP_070399447.1 4121707..4122204(+) (ssb) [Hydrogenophaga sp. YM1]
ATGGCATCCGTCAACAAAGTCATCCTCGTGGGCAACTGCGGCCGCGACGCCGAGATCCGCTACCTGCCCTCCGGCCAGGC
CGTGGCCAACGTGAGCATCGCCACCTCCAGCCGCCGCAAGGACCGCAACACCGGCGAGACCGTGGAAGAGACGCAGTGGC
ACCGCGTGACCTTCTACGACCGCCTCGCCGAAATCGCGGGCGAGTACGTCAAGAAGGGCCGCCCGCTGTACGTCGAAGGG
CGCCTGAAGTACGGCAAGTACACCGACCAGGGCGGCGTCGAGCGCAACACCGTGGACATCATCGCAACCGAGATGCAACT
GCTCGGCGGCCGTGAAGGCATGGGTGGCGGCGACGACGGCGGCGCCCCACCGCGCGCCGCAGCGGCGCCCCGAGCGGCGG
CGCCCGCTGGCCGCCCGGCCCCGTCGCCCCGCCCCGCGCCGGCGCCGGCGCGCCAGCCCACGGGCTTCGACGACATGGAC
GACGACATCCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

49.425

100

0.521
  ssb Neisseria meningitidis MC58

47.701

100

0.503
  ssb Vibrio cholerae strain A1552

45.763

100

0.491
  ssb Glaesserella parasuis strain SC1401

42.623

100

0.473