Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   M3Q_RS18250 Genome accession   NC_018706
Coordinates   3845768..3846586 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii TYTH-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3840768..3851586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3Q_RS18235 (M3Q_3593) pilE 3840985..3841410 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  M3Q_RS18240 (M3Q_3594) pilY2 3841407..3841889 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  M3Q_RS18245 (M3Q_3595) pilY1 3841902..3845756 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  M3Q_RS18250 (M3Q_3596) pilX 3845768..3846586 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  M3Q_RS18255 (M3Q_3597) pilW 3846583..3847584 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  M3Q_RS18260 (M3Q_3598) pilV 3847585..3848145 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  M3Q_RS18265 (M3Q_3599) fimU 3848139..3848612 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  M3Q_RS18270 (M3Q_3600) ispH 3848782..3849732 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M3Q_RS18275 (M3Q_3601) gmk 3849855..3850484 (+) 630 WP_000015937.1 guanylate kinase -
  M3Q_RS18280 (M3Q_3602) rpoZ 3850557..3850835 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  M3Q_RS19465 - 3850874..3851003 (+) 130 Protein_3600 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=53872 M3Q_RS18250 WP_000149374.1 3845768..3846586(-) (pilX) [Acinetobacter baumannii TYTH-1]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=53872 M3Q_RS18250 WP_000149374.1 3845768..3846586(-) (pilX) [Acinetobacter baumannii TYTH-1]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment