Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SPB_RS10800 Genome accession   NZ_AEUT02000001
Coordinates   2152856..2154565 (+) Length   569 a.a.
NCBI ID   WP_003105695.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2147856..2159565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS10775 (SPB_2223) - 2149043..2149570 (+) 528 WP_003104087.1 5-formyltetrahydrofolate cyclo-ligase -
  SPB_RS10780 (SPB_2224) - 2149567..2150241 (+) 675 WP_003103715.1 rhomboid family intramembrane serine protease -
  SPB_RS10785 (SPB_2225) galU 2150264..2151169 (-) 906 WP_003103063.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SPB_RS10790 (SPB_2226) - 2151191..2152207 (-) 1017 WP_003103951.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SPB_RS10795 (SPB_2227) - 2152414..2152863 (+) 450 Protein_2116 MarR family winged helix-turn-helix transcriptional regulator -
  SPB_RS10800 (SPB_2228) rcrP 2152856..2154565 (+) 1710 WP_003105695.1 ABC transporter ATP-binding protein Regulator
  SPB_RS10805 (SPB_2229) - 2154565..2156349 (+) 1785 WP_003102433.1 ABC transporter ATP-binding protein -
  SPB_RS10810 (SPB_2230) - 2156398..2157657 (-) 1260 WP_003102888.1 NAD(P)H-dependent oxidoreductase -
  SPB_RS10815 (SPB_2231) - 2157676..2158278 (-) 603 WP_003104239.1 NADPH-dependent FMN reductase -
  SPB_RS10820 (SPB_2232) - 2158458..2158817 (+) 360 WP_003104655.1 YbaN family protein -
  SPB_RS10925 (SPB_2233) - 2159170..2159538 (-) 369 WP_003105818.1 hypothetical protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 62853.68 Da        Isoelectric Point: 5.6472

>NTDB_id=53869 SPB_RS10800 WP_003105695.1 2152856..2154565(+) (rcrP) [Streptococcus parauberis NCFD 2020]
MLKNAIMRYKWYALGSVLMIIAVVASALLQPHYLKDVLSAVMKNDTDKITEVGQLLLIIAGVGLIAGTVNTILAAKIAQG
VSADIREKVFRKIQSFSYANVEEFNAGNLVVRMTNDVNQIQNLVMMIFQVLLRLPILFIGAFIMAVNTLPKLWWVIILMV
VLIAIIMALVMSQMGPRFGKFQTLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKETSNELLDLNMFIGYGFSMMQPAL
MLVSYLAVFVSLLLVSKMVKTDPTVIGSIASFMTYMMQIMFSIIMVGFMGMQASRAFISIGRLKEVLETEPAMTFATEEV
EDLNGDIVFDHVSFSYPNEEDAMLKDISFSIKSGQMVGVVGATGAGKSTLAQLIPRLFDPQEGTITIGGKDLKTLSQQTL
RETVSIVLQKAILFSGTIADNLRQGNLTADLQAMESAARIAQAQEFIDRMDLAYESEVEERGNNFSGGQKQRLSIARGVI
SNPKVLVLDDSTSALDAKSEKLVQEALNKDLKDTTTIIIAQKISSVVKADTILVLDEGKLIGQGTHAELVANNAVYREIY
DTQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=53869 SPB_RS10800 WP_003105695.1 2152856..2154565(+) (rcrP) [Streptococcus parauberis NCFD 2020]
ATGCTTAAAAATGCCATCATGCGTTATAAATGGTATGCCCTAGGTTCTGTCTTAATGATCATAGCAGTTGTAGCAAGTGC
ATTGTTACAACCTCATTATCTGAAAGATGTGCTAAGTGCAGTCATGAAAAATGACACAGATAAAATTACAGAAGTTGGAC
AGTTATTATTGATTATTGCAGGAGTTGGTTTAATTGCCGGTACTGTCAATACCATTTTAGCAGCTAAGATAGCTCAAGGT
GTATCAGCTGATATCCGTGAGAAGGTATTTAGAAAAATCCAAAGTTTTTCATATGCTAATGTTGAGGAATTTAATGCTGG
TAATTTAGTTGTTCGTATGACCAACGATGTTAACCAAATCCAAAACTTGGTGATGATGATTTTCCAAGTCTTGCTCCGTT
TACCAATTTTATTTATAGGTGCCTTTATTATGGCGGTTAACACTTTACCAAAACTATGGTGGGTTATTATCCTGATGGTT
GTATTAATTGCTATTATTATGGCCCTTGTTATGAGTCAAATGGGCCCACGTTTTGGGAAGTTCCAAACCTTGATGGATAA
AATTAATCGTATTGCTAAAGAGAATCTACGTGGTGTTCGTGTCGTTAAATCGTTCGTTCAAGAAAGAGAACAATATGCTA
AATTCAAAGAGACATCAAATGAACTATTAGATCTTAATATGTTTATTGGGTACGGTTTTTCAATGATGCAACCAGCTTTA
ATGCTAGTTTCGTATTTAGCTGTTTTTGTATCACTCTTATTAGTTTCCAAGATGGTAAAAACAGATCCAACAGTTATAGG
TAGTATTGCTTCCTTCATGACTTATATGATGCAAATCATGTTTTCAATTATTATGGTTGGATTCATGGGGATGCAAGCTA
GTCGTGCTTTTATTTCAATTGGTCGTCTGAAAGAAGTTTTAGAGACAGAACCTGCAATGACTTTTGCTACTGAAGAAGTT
GAAGATTTAAATGGCGATATTGTTTTTGATCATGTATCTTTCTCATATCCAAATGAAGAAGATGCTATGTTAAAAGATAT
TTCCTTCTCTATTAAATCTGGGCAAATGGTTGGTGTCGTTGGCGCAACAGGTGCCGGAAAATCAACCTTGGCTCAATTAA
TTCCTCGTTTATTTGACCCACAAGAGGGTACAATCACAATTGGTGGTAAAGATTTAAAAACACTCAGCCAACAAACACTC
CGCGAAACAGTTTCAATTGTTTTGCAAAAAGCTATTCTCTTTTCGGGGACTATTGCAGATAACCTTCGCCAAGGAAATTT
AACAGCTGATTTACAAGCTATGGAAAGTGCTGCTAGAATCGCGCAAGCTCAAGAATTTATTGACCGAATGGATTTAGCCT
ACGAAAGTGAAGTTGAAGAACGTGGAAATAATTTCTCTGGTGGTCAGAAACAACGGTTGTCCATTGCTCGTGGGGTTATC
AGTAATCCTAAGGTCTTAGTCTTGGACGATTCAACGTCAGCCTTAGATGCTAAGTCAGAGAAACTAGTCCAAGAAGCTTT
AAACAAGGACTTGAAAGATACAACAACAATTATCATTGCACAAAAGATTTCGTCAGTGGTTAAAGCCGATACTATCTTAG
TTTTAGATGAAGGTAAGTTAATTGGTCAAGGAACCCATGCTGAATTAGTAGCAAATAATGCAGTCTACCGTGAAATTTAT
GATACACAGAAAGGTAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(344-493)

ABC transporter transmembrane region (ABC_membrane)

(16-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.185

100

0.367

Multiple sequence alignment