Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQN60_RS21030 Genome accession   NZ_CP070222
Coordinates   4435167..4435697 (-) Length   176 a.a.
NCBI ID   WP_079790102.1    Uniprot ID   A0A603BJ46
Organism   Salmonella enterica subsp. enterica strain Se29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4430167..4440697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN60_RS21015 (JQN60_21015) siiC 4430772..4432091 (-) 1320 WP_079805484.1 SPI-4 type I secretion system protein SiiC -
  JQN60_RS21020 (JQN60_21020) - 4432081..4433469 (-) 1389 WP_046094299.1 MotA/TolQ/ExbB proton channel family protein -
  JQN60_RS21025 (JQN60_21025) siiA 4433466..4434098 (-) 633 WP_000389237.1 SPI-4 type I secretion system auxiliary protein SiiA -
  JQN60_RS21030 (JQN60_21030) ssb 4435167..4435697 (-) 531 WP_079790102.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JQN60_RS21035 (JQN60_21035) uvrA 4435945..4438770 (+) 2826 WP_000357725.1 excinuclease ABC subunit UvrA -
  JQN60_RS21040 (JQN60_21040) - 4438902..4439357 (+) 456 WP_079805480.1 hypothetical protein -
  JQN60_RS21045 (JQN60_21045) - 4439344..4439682 (+) 339 WP_079805478.1 hypothetical protein -
  JQN60_RS21050 (JQN60_21050) - 4439683..4440039 (-) 357 WP_000155666.1 MmcQ/YjbR family DNA-binding protein -
  JQN60_RS21055 (JQN60_21055) - 4440042..4440458 (-) 417 WP_000270387.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19088.17 Da        Isoelectric Point: 5.2456

>NTDB_id=538708 JQN60_RS21030 WP_079790102.1 4435167..4435697(-) (ssb) [Salmonella enterica subsp. enterica strain Se29]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQTRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=538708 JQN60_RS21030 WP_079790102.1 4435167..4435697(-) (ssb) [Salmonella enterica subsp. enterica strain Se29]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTGGTGATGTTCGGCAAGCTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGCCAACTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AGCCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGACGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A603BJ46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.429

100

0.739
  ssb Glaesserella parasuis strain SC1401

60.656

100

0.631
  ssb Neisseria gonorrhoeae MS11

45.902

100

0.477
  ssb Neisseria meningitidis MC58

45.856

100

0.472