Detailed information NTG0053864

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: SPB_RS10305
• Genome accession: NZ_AEUT02000001
• Coordinates: 2039866..2040459 (+)
• Length: 197 a.a.
• NCBI ID: WP_003103584.1
• Uniprot ID: -
• Organism: Streptococcus parauberis NCFD 2020
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2034866..2045459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPB_RS10295 (SPB_2124)	hexB	2036654..2038630 (+)	1977	WP_003102604.1	DNA mismatch repair endonuclease MutL	Machinery gene
SPB_RS10300 (SPB_2125)	-	2038641..2039864 (+)	1224	WP_003103803.1	MFS transporter	-
SPB_RS10305 (SPB_2126)	ruvA	2039866..2040459 (+)	594	WP_003103584.1	Holliday junction branch migration protein RuvA	Machinery gene
SPB_RS10310 (SPB_2127)	-	2040463..2041014 (+)	552	WP_003104649.1	DNA-3-methyladenine glycosylase I	-
SPB_RS10315 (SPB_2128)	cinA	2041403..2042674 (+)	1272	WP_003103228.1	competence/damage-inducible protein A	Machinery gene
SPB_RS10320 (SPB_2129)	recA	2042754..2043893 (+)	1140	WP_003102546.1	recombinase RecA	Machinery gene
SPB_RS10325 (SPB_2130)	spx	2044248..2044646 (+)	399	WP_003104943.1	transcriptional regulator Spx	-
SPB_RS10330 (SPB_2131)	-	2044760..2045029 (+)	270	WP_003104158.1	IreB family regulatory phosphoprotein	-
SPB_RS10335 (SPB_2132)	ruvX	2045026..2045445 (+)	420	WP_003105581.1	Holliday junction resolvase RuvX	-

Sequence

Protein

• Length: 197 a.a.
• Molecular weight: 21720.19 Da
• Isoelectric Point: 5.3214

>NTDB_id=53864 SPB_RS10305 WP_003103584.1 2039866..2040459(+) (ruvA) [Streptococcus parauberis NCFD 2020]
MFDYIKGQLTKITAKYIVVEANGLGYIIYVANPYSFSDSVNQQVTIYLHQVIREDAHLLFGFHTEEEKDVFLKLISVSGI
GPMTALAIVAVDDNEGLVMAIDNSDIKYLMKFPKIGKKTAQQMILDLAGKFVEAPKDSAPTSKANAGGNLQLDEAIEALL
ALGYKATELKKIRAFFEGTDETAEQYIKSALKMLMKG

Nucleotide

• Length: 594 bp

>NTDB_id=53864 SPB_RS10305 WP_003103584.1 2039866..2040459(+) (ruvA) [Streptococcus parauberis NCFD 2020]
ATGTTTGATTATATAAAAGGTCAATTAACTAAAATTACTGCTAAATATATTGTGGTCGAAGCTAATGGTTTAGGCTATAT
TATCTATGTTGCTAATCCTTATAGTTTTTCTGACAGTGTCAATCAACAGGTCACTATTTATTTACACCAAGTTATTCGTG
AGGACGCTCACCTCTTATTTGGTTTTCATACAGAAGAGGAAAAAGATGTCTTCTTGAAACTCATCTCAGTTTCTGGAATT
GGTCCTATGACTGCGCTTGCGATTGTCGCCGTCGACGATAATGAAGGCTTAGTCATGGCCATTGACAACAGTGATATCAA
GTACTTAATGAAATTCCCTAAAATTGGTAAGAAAACAGCTCAGCAAATGATTTTAGACTTAGCTGGTAAGTTTGTTGAGG
CACCTAAAGATAGTGCCCCAACAAGTAAAGCAAACGCGGGTGGCAATCTACAACTTGATGAAGCTATTGAAGCACTACTT
GCACTGGGCTACAAAGCAACAGAATTGAAGAAAATTCGAGCTTTCTTTGAAGGAACAGATGAAACAGCTGAGCAGTATAT
TAAATCAGCTCTTAAAATGTTGATGAAAGGTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-127)

• RuvA, C-terminal domain (RuvA_C) (152-195)

• RuvA N terminal domain (RuvA_N) (1-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae R6	66.667	100	0.67
ruvA	Streptococcus pneumoniae D39	66.667	100	0.67
ruvA	Streptococcus pneumoniae TIGR4	66.497	100	0.665
ruvA	Bacillus subtilis subsp. subtilis str. 168	41.063	100	0.431