NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	I6K13_RS19895	Genome accession	NZ_CP070162
Coordinates	4084704..4085828 (-)	Length	374 a.a.
NCBI ID	WP_000228517.1	Uniprot ID	E2QFE2
Organism	Escherichia coli strain FDAARGOS_1283
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 4079704..4090828

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6K13_RS19865 (I6K13_19860)	yrdA	4081504..4082058 (+)	555	WP_001286216.1	gamma carbonic anhydrase family protein	-
I6K13_RS19870 (I6K13_19865)	yrdB	4082034..4082291 (-)	258	WP_001070567.1	DUF1488 domain-containing protein	-
I6K13_RS19875 (I6K13_19870)	aroE	4082288..4083106 (-)	819	WP_000451230.1	shikimate dehydrogenase	-
I6K13_RS19880 (I6K13_19875)	tsaC	4083111..4083683 (-)	573	WP_001297709.1	L-threonylcarbamoyladenylate synthase type 1 TsaC	-
I6K13_RS19885 (I6K13_19880)	yrdD	4083688..4084230 (-)	543	WP_001312137.1	type I DNA topoisomerase	-
I6K13_RS19890 (I6K13_19885)	smg	4084259..4084732 (-)	474	WP_000460672.1	DUF494 family protein Smg	-
I6K13_RS19895 (I6K13_19890)	dprA	4084704..4085828 (-)	1125	WP_000228517.1	DNA-protecting protein DprA	Machinery gene
I6K13_RS19900 (I6K13_19895)	def	4085958..4086467 (+)	510	WP_000114984.1	peptide deformylase	-
I6K13_RS19905 (I6K13_19900)	fmt	4086482..4087429 (+)	948	WP_000004421.1	methionyl-tRNA formyltransferase	-
I6K13_RS19910 (I6K13_19905)	rsmB	4087481..4088770 (+)	1290	WP_113263663.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
I6K13_RS19915 (I6K13_19910)	trkA	4088792..4090168 (+)	1377	WP_000691382.1	Trk system potassium transporter TrkA	-
I6K13_RS19920 (I6K13_19915)	mscL	4090298..4090711 (+)	414	WP_000022450.1	large-conductance mechanosensitive channel protein MscL	-

Sequence

Protein

Download Length: 374 a.a. Molecular weight: 40910.86 Da Isoelectric Point: 6.0395

                                >NTDB_id=538589 I6K13_RS19895 WP_000228517.1 4084704..4085828(-) (dprA) [Escherichia coli strain FDAARGOS_1283]

MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE

FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN

GVSIAVLGNGLNTIHPRRHAPLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA

LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE

VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide

Download Length: 1125 bp

                                >NTDB_id=538589 I6K13_RS19895 WP_000228517.1 4084704..4085828(-) (dprA) [Escherichia coli strain FDAARGOS_1283]

ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTATGGCGATGATATGGTCCGTATAGCTCACTG

GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT

CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA

TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGTTGCATTC

ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG

CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT

GGCGTTAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCTCCACTGGCTGCCAGTCTACT

TGAGCAAGGTGGTGCTCTCGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA

TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG

CTTGAGCAGGGGCGTGAAGTTTTTGCTTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA

ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC

CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG

GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT

AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG

TTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	E2QFE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Vibrio campbellii strain DS40M4	48.78	98.663	0.481
dprA	Vibrio cholerae strain A1552	49.355	82.888	0.409
dprA	Glaesserella parasuis strain SC1401	44.807	90.107	0.404
dprA	Haemophilus influenzae Rd KW20	44.214	90.107	0.398
dprA	Legionella pneumophila strain ERS1305867	44.242	88.235	0.39

Detailed information NTG0538589