Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF/cglF   Type   Machinery gene
Locus tag   SPB_RS09080 Genome accession   NZ_AEUT02000001
Coordinates   1813831..1814268 (-) Length   145 a.a.
NCBI ID   WP_003102915.1    Uniprot ID   A0ABN0IPC0
Organism   Streptococcus parauberis NCFD 2020     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1808831..1819268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS09050 (SPB_1869) - 1809614..1810267 (-) 654 WP_003104674.1 CPBP family intramembrane glutamic endopeptidase -
  SPB_RS09055 (SPB_1870) - 1810276..1810728 (-) 453 WP_003104510.1 hypothetical protein -
  SPB_RS09060 (SPB_1871) - 1810721..1810933 (-) 213 WP_003105344.1 helix-turn-helix transcriptional regulator -
  SPB_RS09065 (SPB_1872) - 1811044..1812237 (-) 1194 WP_003102855.1 acetate kinase -
  SPB_RS09070 (SPB_1873) comGH 1812293..1813249 (-) 957 WP_003103712.1 class I SAM-dependent methyltransferase Machinery gene
  SPB_RS09075 (SPB_1874) comGG 1813401..1813853 (-) 453 WP_003105699.1 competence type IV pilus minor pilin ComGG -
  SPB_RS09080 (SPB_1875) comGF/cglF 1813831..1814268 (-) 438 WP_003102915.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPB_RS09085 (SPB_1876) comGE 1814246..1814545 (-) 300 WP_003104125.1 competence type IV pilus minor pilin ComGE Machinery gene
  SPB_RS11605 (SPB_1877) comGD 1814517..1814960 (-) 444 WP_307877782.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPB_RS09095 (SPB_1878) comGC 1814914..1815240 (-) 327 WP_003104947.1 competence type IV pilus major pilin ComGC Machinery gene
  SPB_RS09100 (SPB_1879) comGB 1815237..1816292 (-) 1056 WP_076751810.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPB_RS09105 (SPB_1880) comGA 1816204..1817145 (-) 942 WP_003102925.1 competence type IV pilus ATPase ComGA Machinery gene
  SPB_RS09110 (SPB_1881) - 1817199..1817573 (-) 375 WP_003103833.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16538.25 Da        Isoelectric Point: 9.7525

>NTDB_id=53850 SPB_RS09080 WP_003102915.1 1813831..1814268(-) (comGF/cglF) [Streptococcus parauberis NCFD 2020]
MLQKLVTKGFTLFEALIALLVISGSLLVYQGLTKSTFANMNYLSQSDQDSWLLFANQFRAELEGSQFIEIKGKKMLVKKD
EKVVSFRLTEKNDFRKSAASGKGLNPMLLNLQDIQMTTVNHQLTLHLIWQSGLERDFIYAFEKPS

Nucleotide


Download         Length: 438 bp        

>NTDB_id=53850 SPB_RS09080 WP_003102915.1 1813831..1814268(-) (comGF/cglF) [Streptococcus parauberis NCFD 2020]
ATGTTACAAAAATTAGTGACTAAGGGTTTTACCTTATTTGAAGCCTTAATTGCACTTTTAGTTATCTCTGGATCTCTACT
GGTTTATCAAGGTTTAACTAAGTCAACGTTTGCCAATATGAACTATCTAAGTCAAAGTGATCAAGATAGTTGGCTCTTAT
TTGCAAATCAGTTTAGAGCTGAATTGGAAGGTTCACAATTTATTGAAATTAAAGGAAAAAAAATGCTTGTTAAAAAAGAT
GAAAAGGTAGTTTCTTTTAGATTAACTGAAAAAAATGACTTTAGAAAATCGGCGGCTAGTGGGAAAGGCTTAAATCCAAT
GTTGTTAAACTTACAGGATATTCAAATGACGACAGTAAATCACCAACTAACTCTTCATTTGATCTGGCAAAGTGGCCTGG
AAAGGGATTTTATCTATGCATTTGAGAAGCCAAGTTAA

Domains

Predicted by InterProScan.

Putative Competence protein ComGF (ComGF)

(41-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus mitis SK321

44.928

95.172

0.428
  comGF/cglF Streptococcus mitis NCTC 12261

43.796

94.483

0.414
  comGF Streptococcus mutans UA140

42.029

95.172

0.4
  comGF Streptococcus mutans UA159

41.304

95.172

0.393
  comGF/cglF Streptococcus pneumoniae R6

40.58

95.172

0.386
  comGF/cglF Streptococcus pneumoniae TIGR4

40.58

95.172

0.386
  comGF/cglF Streptococcus pneumoniae D39

40.58

95.172

0.386
  comGF/cglF Streptococcus pneumoniae Rx1

40.58

95.172

0.386

Multiple sequence alignment