Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6K61_RS10390 Genome accession   NZ_CP070144
Coordinates   2247199..2247726 (-) Length   175 a.a.
NCBI ID   WP_004097799.1    Uniprot ID   A0A0J2K732
Organism   Klebsiella oxytoca strain FDAARGOS_1331     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2242199..2252726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K61_RS10380 (I6K61_10380) - 2242643..2244904 (-) 2262 WP_049593764.1 TonB-dependent siderophore receptor -
  I6K61_RS10385 (I6K61_10385) - 2245508..2247112 (+) 1605 WP_204753141.1 lytic transglycosylase F -
  I6K61_RS10390 (I6K61_10390) ssb 2247199..2247726 (-) 528 WP_004097799.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6K61_RS10395 (I6K61_10395) uvrA 2247973..2250798 (+) 2826 WP_004109498.1 excinuclease ABC subunit UvrA -
  I6K61_RS10400 (I6K61_10400) - 2250932..2251342 (+) 411 WP_049127707.1 hypothetical protein -
  I6K61_RS10405 (I6K61_10405) - 2251345..2251659 (+) 315 WP_023320177.1 hypothetical protein -
  I6K61_RS10410 (I6K61_10410) - 2251662..2252015 (-) 354 WP_004097793.1 MmcQ/YjbR family DNA-binding protein -
  I6K61_RS10415 (I6K61_10415) - 2252018..2252434 (-) 417 WP_004109507.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18776.81 Da        Isoelectric Point: 5.2456

>NTDB_id=538466 I6K61_RS10390 WP_004097799.1 2247199..2247726(-) (ssb) [Klebsiella oxytoca strain FDAARGOS_1331]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=538466 I6K61_RS10390 WP_004097799.1 2247199..2247726(-) (ssb) [Klebsiella oxytoca strain FDAARGOS_1331]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGCAAAGGTTCACAGGTCTATATT
GAAGGCCAGCTGCGCACCCGTAAATGGACTGACCAATCTGGTCAGGAAAAATACACCACCGAGGTTGTAGTCAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCGGGCGCCCCGGCAGGCGGTGGTCAGCAGCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCGCAGCAGCAGGCTCCGGCAGCG
CCTTCCAATGAGCCGCCGATGGACTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J2K732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.611
  ssb Neisseria meningitidis MC58

48.045

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.491