Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6K11_RS16180 Genome accession   NZ_CP070134
Coordinates   3184508..3185044 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain FDAARGOS_1281     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3179508..3190044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K11_RS16160 (I6K11_16180) aphA 3179796..3180509 (+) 714 WP_001226928.1 acid phosphatase AphA -
  I6K11_RS16165 (I6K11_16185) yjbQ 3180620..3181036 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6K11_RS16170 (I6K11_16190) yjbR 3181040..3181396 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  I6K11_RS16175 (I6K11_16195) uvrA 3181431..3184253 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  I6K11_RS16180 (I6K11_16200) ssb 3184508..3185044 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6K11_RS16185 (I6K11_16205) yjcB 3185143..3185424 (-) 282 WP_001295689.1 YjcB family protein -
  I6K11_RS16190 (I6K11_16210) pdeC 3185854..3186504 (+) 651 Protein_2991 c-di-GMP phosphodiesterase PdeC -
  I6K11_RS16200 (I6K11_16220) pdeC 3187273..3188217 (+) 945 Protein_2993 c-di-GMP phosphodiesterase PdeC -
  I6K11_RS16205 (I6K11_16225) soxS 3188220..3188543 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  I6K11_RS16210 (I6K11_16230) soxR 3188629..3189093 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=538458 I6K11_RS16180 WP_000168305.1 3184508..3185044(+) (ssb) [Escherichia coli strain FDAARGOS_1281]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=538458 I6K11_RS16180 WP_000168305.1 3184508..3185044(+) (ssb) [Escherichia coli strain FDAARGOS_1281]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489