Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LI754_RS06800 Genome accession   NZ_CP085320
Coordinates   1364445..1365218 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain CJFA-182     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359445..1370218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LI754_RS06780 trmFO 1359788..1361095 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LI754_RS06785 xerC 1361513..1362409 (+) 897 WP_001015602.1 tyrosine recombinase XerC -
  LI754_RS06790 hslV 1362406..1362951 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LI754_RS06795 hslU 1363017..1364420 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LI754_RS06800 codY 1364445..1365218 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LI754_RS06805 - 1365269..1365361 (+) 93 WP_031788481.1 hypothetical protein -
  LI754_RS06810 rpsB 1365560..1366327 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  LI754_RS06815 - 1366361..1366474 (+) 114 WP_001789890.1 hypothetical protein -
  LI754_RS06820 tsf 1366509..1367390 (+) 882 WP_044289264.1 translation elongation factor Ts -
  LI754_RS06825 pyrH 1367527..1368249 (+) 723 WP_000057330.1 UMP kinase -
  LI754_RS06830 frr 1368268..1368822 (+) 555 WP_001280006.1 ribosome recycling factor -
  LI754_RS06835 - 1369195..1369965 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=538377 LI754_RS06800 WP_000055337.1 1364445..1365218(+) (codY) [Staphylococcus aureus strain CJFA-182]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=538377 LI754_RS06800 WP_000055337.1 1364445..1365218(+) (codY) [Staphylococcus aureus strain CJFA-182]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGACTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCGCGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428