Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L01_RS08185 Genome accession   NZ_CP070077
Coordinates   1725486..1726022 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain FDAARGOS_1371     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1720486..1731022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L01_RS08165 (I6L01_08165) soxR 1722214..1722678 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  I6L01_RS08170 (I6L01_08170) soxS 1722764..1723087 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  I6L01_RS08175 (I6L01_08175) pdeC 1723090..1724676 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  I6L01_RS08180 (I6L01_08180) yjcB 1725106..1725387 (+) 282 WP_001295689.1 YjcB family protein -
  I6L01_RS08185 (I6L01_08185) ssb 1725486..1726022 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6L01_RS08190 (I6L01_08190) uvrA 1726277..1729099 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  I6L01_RS08195 (I6L01_08195) yjbR 1729134..1729490 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  I6L01_RS08200 (I6L01_08200) yjbQ 1729494..1729910 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6L01_RS08205 (I6L01_08205) aphA 1730021..1730734 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=538189 I6L01_RS08185 WP_000168305.1 1725486..1726022(-) (ssb) [Escherichia coli strain FDAARGOS_1371]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=538189 I6L01_RS08185 WP_000168305.1 1725486..1726022(-) (ssb) [Escherichia coli strain FDAARGOS_1371]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489