Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6K17_RS17535 Genome accession   NZ_CP070071
Coordinates   3418986..3419522 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain FDAARGOS_1287     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3413986..3424522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K17_RS17515 (I6K17_17520) soxR 3415715..3416179 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  I6K17_RS17520 (I6K17_17525) soxS 3416265..3416588 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  I6K17_RS17525 (I6K17_17530) pdeC 3416591..3418177 (-) 1587 WP_000017978.1 c-di-GMP phosphodiesterase PdeC -
  I6K17_RS17530 (I6K17_17535) yjcB 3418606..3418887 (+) 282 WP_001295689.1 YjcB family protein -
  I6K17_RS17535 (I6K17_17540) ssb 3418986..3419522 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6K17_RS17540 (I6K17_17545) uvrA 3419777..3422599 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  I6K17_RS17545 (I6K17_17550) yjbR 3422634..3422990 (-) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  I6K17_RS17550 (I6K17_17555) yjbQ 3422994..3423410 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6K17_RS17555 (I6K17_17560) aphA 3423521..3424234 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=538173 I6K17_RS17535 WP_000168305.1 3418986..3419522(-) (ssb) [Escherichia coli strain FDAARGOS_1287]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=538173 I6K17_RS17535 WP_000168305.1 3418986..3419522(-) (ssb) [Escherichia coli strain FDAARGOS_1287]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489