Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SPB_RS05450 Genome accession   NZ_AEUT02000001
Coordinates   1086411..1087082 (-) Length   223 a.a.
NCBI ID   WP_254655069.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1081411..1092082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS05445 (SPB_1128) raiA 1085788..1086336 (-) 549 WP_003105371.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SPB_RS05450 (SPB_1129) comFC/cflB 1086411..1087082 (-) 672 WP_254655069.1 ComF family protein Machinery gene
  SPB_RS05455 (SPB_1130) comFA/cflA 1087072..1088376 (-) 1305 WP_003104831.1 DEAD/DEAH box helicase Machinery gene
  SPB_RS05460 (SPB_1131) - 1088433..1089065 (+) 633 WP_003105463.1 YigZ family protein -
  SPB_RS05465 (SPB_1132) cysK 1089188..1090117 (+) 930 WP_003103108.1 cysteine synthase A -
  SPB_RS05470 (SPB_1133) - 1090193..1090546 (-) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  SPB_RS05475 (SPB_1134) - 1090546..1091946 (-) 1401 WP_003104279.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25811.04 Da        Isoelectric Point: 8.7219

>NTDB_id=53814 SPB_RS05450 WP_254655069.1 1086411..1087082(-) (comFC/cflB) [Streptococcus parauberis NCFD 2020]
MVNKCLICGENCRPRLSFTDICFMVNRQSQLCETCSGLFERIGRKHCPTCCKVGLELMCSDCKSWFENGVEVSHKALYKY
NLAMKDYFSKYKFQGDYLLKSIFSKELKIYIEKNYEGYTNLVVPISQSRMETRGFNQVSSILADVNISYIDILRKCEGKK
QSEKTKHQRLESENQFSLLHIENLPKKILIIDDIYTTGTTISQIRKLLLQHGINDIKSVSIAR

Nucleotide


Download         Length: 672 bp        

>NTDB_id=53814 SPB_RS05450 WP_254655069.1 1086411..1087082(-) (comFC/cflB) [Streptococcus parauberis NCFD 2020]
ATGGTGAATAAGTGTTTAATATGTGGAGAAAATTGTAGACCAAGATTATCATTTACGGATATCTGTTTTATGGTGAATCG
CCAAAGCCAACTGTGTGAAACATGTTCTGGCTTATTCGAAAGAATTGGTAGGAAACATTGCCCAACCTGTTGCAAAGTTG
GTTTAGAATTAATGTGTAGTGACTGTAAATCATGGTTTGAAAATGGGGTAGAAGTATCACACAAAGCACTATATAAGTAT
AATTTAGCAATGAAAGATTATTTTTCTAAATACAAGTTTCAAGGTGACTATTTATTAAAAAGTATATTTTCTAAAGAATT
AAAAATATACATTGAAAAGAATTATGAAGGTTATACAAATCTGGTTGTACCAATTAGCCAGAGTAGAATGGAAACGCGTG
GGTTTAATCAAGTATCCTCAATTCTTGCAGACGTCAATATTTCTTATATAGATATCTTACGAAAATGTGAAGGAAAAAAG
CAATCTGAGAAAACCAAACATCAAAGGCTAGAATCTGAGAATCAATTTTCACTTCTTCATATAGAAAATCTTCCAAAAAA
AATACTAATTATTGATGATATTTATACGACGGGGACAACAATTTCACAAATCAGAAAGTTGTTACTTCAGCATGGAATAA
ATGATATAAAAAGTGTATCGATAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45

98.655

0.444
  comFC/cflB Streptococcus pneumoniae TIGR4

44.091

98.655

0.435
  comFC/cflB Streptococcus pneumoniae Rx1

43.636

98.655

0.43
  comFC/cflB Streptococcus pneumoniae D39

43.636

98.655

0.43
  comFC/cflB Streptococcus pneumoniae R6

43.636

98.655

0.43
  comFC/cflB Streptococcus mitis SK321

43.636

98.655

0.43

Multiple sequence alignment