Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SPB_RS04550 Genome accession   NZ_AEUT02000001
Coordinates   905403..906338 (-) Length   311 a.a.
NCBI ID   WP_003103858.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 900403..911338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS04530 (SPB_0936) - 900727..901236 (-) 510 WP_003103921.1 HAD family hydrolase -
  SPB_RS04535 (SPB_0938) - 901391..902632 (-) 1242 WP_037621160.1 OFA family MFS transporter -
  SPB_RS04540 (SPB_0939) - 902766..903404 (-) 639 WP_003106091.1 HAD family phosphatase -
  SPB_RS04545 (SPB_0940) pepF 903575..905377 (-) 1803 WP_003105486.1 oligoendopeptidase F Regulator
  SPB_RS04550 (SPB_0941) coiA 905403..906338 (-) 936 WP_003103858.1 competence protein CoiA Machinery gene
  SPB_RS04555 (SPB_0942) - 906411..907556 (-) 1146 WP_003102523.1 MFS transporter -
  SPB_RS04560 (SPB_0943) - 907656..908372 (-) 717 WP_003105924.1 pseudouridine synthase -
  SPB_RS04565 (SPB_0944) nagB 908450..909154 (-) 705 WP_003104983.1 glucosamine-6-phosphate deaminase -
  SPB_RS04570 (SPB_0945) queA 909346..910374 (+) 1029 WP_003104379.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 36542.63 Da        Isoelectric Point: 8.7619

>NTDB_id=53805 SPB_RS04550 WP_003103858.1 905403..906338(-) (coiA) [Streptococcus parauberis NCFD 2020]
MLVAIDDLGNRLTTLDNLPKTGIYYCPVCKGQVSLKRGKVKQAHFAHKNLLNCPNSSLNESTEHLLLKAKLYQNLKKSEE
VTIETFFPSINQIADLQVNHKLVLEVQCSSLPPDRLVERTKNYRDNDQYIIWLLGKNLWIKHKLSYLQKQFLSFSWSIGF
YLWEIDLEKNCLRLCYMIHEDLMGKVTCLTRTCPLDGNLMSFFRMPFQKMNLEPIKVKSDSHLLQKIQKALKYRNKYWML
RQEKAYQMGINLLCLSVEDFYPQYNPPKCEQGFCLIESDLKPFYDAFEAYNKEISNKDVQTLHPPSFYVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=53805 SPB_RS04550 WP_003103858.1 905403..906338(-) (coiA) [Streptococcus parauberis NCFD 2020]
ATGTTAGTTGCAATTGATGATTTGGGGAATCGGCTCACCACCTTAGATAATTTACCCAAAACAGGTATCTATTACTGTCC
AGTATGTAAAGGTCAAGTCTCTTTAAAGAGAGGAAAAGTGAAACAAGCACATTTTGCTCATAAGAATTTATTAAATTGTC
CTAACAGCTCACTTAACGAATCAACGGAACATTTATTACTCAAGGCTAAACTCTACCAGAATCTTAAAAAGAGTGAAGAA
GTGACGATTGAAACCTTTTTTCCAAGTATAAATCAAATTGCTGATTTACAAGTCAATCATAAATTAGTATTAGAAGTCCA
GTGTAGTTCATTACCTCCAGATAGATTAGTGGAACGAACAAAAAATTATAGAGACAATGATCAATACATTATCTGGTTAT
TAGGTAAGAATCTATGGATAAAGCATAAATTAAGTTATCTTCAAAAACAATTCTTATCATTTTCTTGGTCGATAGGCTTC
TATCTCTGGGAAATTGATCTAGAAAAAAATTGCCTAAGACTCTGCTATATGATTCATGAGGATTTAATGGGGAAGGTAAC
TTGTTTAACTAGAACTTGTCCTCTGGATGGGAACCTTATGTCATTTTTTAGAATGCCATTTCAAAAAATGAATCTAGAAC
CTATCAAGGTAAAAAGCGATAGCCATCTTCTGCAAAAAATTCAAAAAGCTTTGAAATATCGGAATAAGTATTGGATGCTT
AGGCAGGAAAAAGCCTATCAAATGGGAATTAATCTTTTATGTTTGTCGGTTGAGGATTTTTATCCGCAATATAATCCACC
TAAGTGTGAGCAAGGATTCTGTTTAATTGAGTCGGATTTAAAACCTTTTTATGATGCATTTGAGGCATATAATAAAGAAA
TTTCTAATAAAGACGTGCAAACGCTTCACCCTCCTAGCTTTTATGTTAAAATATGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

43.366

99.357

0.431
  coiA Streptococcus pneumoniae TIGR4

40.129

99.357

0.399
  coiA Streptococcus pneumoniae Rx1

40.129

99.357

0.399
  coiA Streptococcus pneumoniae D39

40.129

99.357

0.399
  coiA Streptococcus pneumoniae R6

40.129

99.357

0.399
  coiA Lactococcus lactis subsp. cremoris KW2

36.957

100

0.383

Multiple sequence alignment