Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6K63_RS01015 Genome accession   NZ_CP070020
Coordinates   215422..215949 (+) Length   175 a.a.
NCBI ID   WP_004097799.1    Uniprot ID   A0A0J2K732
Organism   Klebsiella oxytoca strain FDAARGOS_1333     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 210422..220949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K63_RS00990 (I6K63_00990) - 210714..211130 (+) 417 WP_004109507.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6K63_RS00995 (I6K63_00995) - 211133..211486 (+) 354 WP_004097793.1 MmcQ/YjbR family DNA-binding protein -
  I6K63_RS01000 (I6K63_01000) - 211489..211803 (-) 315 WP_196557765.1 hypothetical protein -
  I6K63_RS01005 (I6K63_01005) - 211806..212216 (-) 411 WP_064343596.1 hypothetical protein -
  I6K63_RS01010 (I6K63_01010) uvrA 212350..215175 (-) 2826 WP_196557767.1 excinuclease ABC subunit UvrA -
  I6K63_RS01015 (I6K63_01015) ssb 215422..215949 (+) 528 WP_004097799.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6K63_RS01020 (I6K63_01020) - 216036..217649 (-) 1614 WP_204746150.1 lytic transglycosylase F -
  I6K63_RS01025 (I6K63_01025) - 218253..220514 (+) 2262 WP_142477630.1 TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18776.81 Da        Isoelectric Point: 5.2456

>NTDB_id=537876 I6K63_RS01015 WP_004097799.1 215422..215949(+) (ssb) [Klebsiella oxytoca strain FDAARGOS_1333]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=537876 I6K63_RS01015 WP_004097799.1 215422..215949(+) (ssb) [Klebsiella oxytoca strain FDAARGOS_1333]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGCAAAGGTTCTCAGGTCTATATT
GAAGGCCAGCTGCGCACCCGTAAATGGACTGACCAATCCGGTCAGGAAAAATACACCACCGAGGTTGTAGTCAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCGGGCGCCCCGGCAGGCGGTGGTCAGCAGCAGGGCGGTTGGG
GACAGCCTCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCGCAGCAGCAGGCTCCGGCAGCG
CCTTCCAATGAGCCGCCGATGGACTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J2K732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.611
  ssb Neisseria meningitidis MC58

48.045

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.491