Detailed information NTG0053769

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: HMPREF9320_RS01510
• Genome accession: NZ_AENS01000008
• Coordinates: 24578..25576 (-)
• Length: 332 a.a.
• NCBI ID: WP_007891873.1
• Uniprot ID: -
• Organism: Streptococcus pseudoporcinus SPIN 20026
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 19578..30576

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF9320_RS01495 (HMPREF9320_0033)	-	21480..23258 (-)	1779	WP_007891756.1	acyltransferase family protein	-
HMPREF9320_RS01500 (HMPREF9320_0034)	-	23255..23656 (-)	402	WP_007891657.1	membrane protein	-
HMPREF9320_RS01505 (HMPREF9320_0035)	-	23665..24108 (-)	444	WP_007891874.1	low molecular weight protein-tyrosine-phosphatase	-
HMPREF9320_RS01510 (HMPREF9320_0036)	ruvB	24578..25576 (-)	999	WP_007891873.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
HMPREF9320_RS10660	-	25608..25706 (-)	99	WP_198920371.1	quorum-sensing system DWW-type pheromone	-
HMPREF9320_RS01515 (HMPREF9320_0037)	comR	25779..26684 (-)	906	WP_007891754.1	helix-turn-helix transcriptional regulator	Regulator
HMPREF9320_RS01520 (HMPREF9320_0038)	purB	26787..28079 (-)	1293	WP_007891752.1	adenylosuccinate lyase	-
HMPREF9320_RS01525 (HMPREF9320_0039)	-	28118..28546 (-)	429	WP_007892002.1	GNAT family N-acetyltransferase	-
HMPREF9320_RS10605	-	28510..28734 (-)	225	WP_162097551.1	hypothetical protein	-
HMPREF9320_RS01530 (HMPREF9320_0040)	-	29695..30312 (+)	618	WP_007891751.1	hypothetical protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37553.97 Da
• Isoelectric Point: 4.6063

>NTDB_id=53769 HMPREF9320_RS01510 WP_007891873.1 24578..25576(-) (ruvB) [Streptococcus pseudoporcinus SPIN 20026]
MTRILDNDVMGNEELVERTLRPQFLREYIGQDKVKDQLNIFIEAAKMRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKSGDLVAILNDLEPGDVLFIDEIHRIPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQVDDLTEIIERTSDIFEMEIVQEAAHELARRSRGTPRIANRLLKRVRDYAQIMGNGVIT
KDITDKALEMLDVDQEGLDYVDQKILRTMIEIYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIVRTRTGRVATQK
AYQHLHYPYTEK

Nucleotide

• Length: 999 bp

>NTDB_id=53769 HMPREF9320_RS01510 WP_007891873.1 24578..25576(-) (ruvB) [Streptococcus pseudoporcinus SPIN 20026]
ATGACTAGAATTTTGGATAATGATGTGATGGGGAATGAGGAACTTGTTGAACGTACTTTGCGCCCACAATTTTTAAGAGA
ATATATTGGACAAGATAAGGTAAAGGATCAGCTTAATATTTTTATTGAAGCTGCAAAGATGCGGGATGAGTCATTAGATC
ATGTGTTACTTTTTGGTCCACCAGGATTAGGAAAAACGACTATGGCATTTGTTATTGCTAATGAGCTTGGGGTTAATCTT
AAGCAGACGTCAGGACCAGCTATTGAAAAATCTGGTGATTTGGTAGCTATTTTAAATGATTTAGAGCCTGGAGATGTCCT
ATTCATTGATGAGATACATCGAATCCCGATGGCTGTTGAAGAAGTCCTTTACAGTGCTATGGAAGATTTTTATATTGATA
TTATGATTGGTGCCGGAGATACTAGCCGGAGCGTCCATCTAGAATTACCGCCGTTTACTTTGATTGGGGCAACTACACGT
GCAGGAATGTTGTCAAATCCATTAAGGGCACGCTTTGGTATTACGGGCCATATGGAATATTATCAAGTTGACGATTTGAC
TGAAATTATAGAGCGTACCTCAGATATTTTTGAGATGGAAATTGTTCAAGAAGCTGCTCATGAGCTTGCCCGACGTAGCC
GGGGCACACCCCGTATTGCTAATAGACTTTTGAAACGTGTTCGAGATTATGCACAAATTATGGGAAATGGTGTCATCACC
AAAGATATCACTGATAAAGCTTTAGAAATGCTGGATGTTGACCAGGAAGGTTTAGATTATGTTGATCAAAAAATTCTACG
CACCATGATTGAGATCTATAATGGTGGGCCAGTTGGCTTGGGGACCTTGTCTGTTAATATTGCTGAAGAACGAGATACAG
TAGAGGATATGTACGAGCCTTATCTCATTCAAAAAGGTTTTATTGTGCGGACACGCACGGGGCGAGTAGCAACACAAAAA
GCCTATCAACATTTACATTATCCTTACACAGAGAAATAG

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	88.554	100	0.886
ruvB	Streptococcus pneumoniae R6	88.253	100	0.883
ruvB	Streptococcus pneumoniae D39	88.253	100	0.883
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.494	97.59	0.59
ruvB	Helicobacter pylori 26695	50	98.193	0.491
ruvB	Synechocystis sp. PCC 6803	49.838	93.072	0.464