Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6K64_RS26870 Genome accession   NZ_CP069911
Coordinates   5778222..5778749 (-) Length   175 a.a.
NCBI ID   WP_004097799.1    Uniprot ID   A0A0J2K732
Organism   Klebsiella oxytoca strain FDAARGOS_1334     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5773222..5783749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K64_RS26860 (I6K64_26860) - 5773713..5775974 (-) 2262 WP_016808428.1 TonB-dependent siderophore receptor -
  I6K64_RS26865 (I6K64_26865) - 5776567..5778135 (+) 1569 WP_163529831.1 lytic transglycosylase F -
  I6K64_RS26870 (I6K64_26870) ssb 5778222..5778749 (-) 528 WP_004097799.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6K64_RS26875 (I6K64_26875) uvrA 5778996..5781821 (+) 2826 WP_004109498.1 excinuclease ABC subunit UvrA -
  I6K64_RS26880 (I6K64_26880) - 5781955..5782365 (+) 411 WP_204723961.1 hypothetical protein -
  I6K64_RS26885 (I6K64_26885) - 5782368..5782685 (+) 318 WP_004109504.1 hypothetical protein -
  I6K64_RS26890 (I6K64_26890) - 5782688..5783041 (-) 354 WP_004097793.1 MmcQ/YjbR family DNA-binding protein -
  I6K64_RS26895 (I6K64_26895) - 5783044..5783460 (-) 417 WP_004109507.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18776.81 Da        Isoelectric Point: 5.2456

>NTDB_id=537363 I6K64_RS26870 WP_004097799.1 5778222..5778749(-) (ssb) [Klebsiella oxytoca strain FDAARGOS_1334]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=537363 I6K64_RS26870 WP_004097799.1 5778222..5778749(-) (ssb) [Klebsiella oxytoca strain FDAARGOS_1334]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGCAAAGGTTCTCAGGTCTATATT
GAAGGCCAGCTGCGCACCCGTAAATGGACTGACCAATCCGGTCAGGAAAAATACACCACCGAGGTTGTAGTCAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCGGGCGCCCCGGCAGGCGGTGGTCAGCAGCAGGGCGGTTGGG
GACAGCCTCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCGCAGCAGCAGGCTCCGGCAGCG
CCTTCCAATGAGCCGCCGATGGACTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J2K732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.611
  ssb Neisseria meningitidis MC58

48.045

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.491