Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LIO32_RS08160 Genome accession   NZ_CP085087
Coordinates   1619585..1620202 (+) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain Ssuis_MA2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1614585..1625202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO32_RS08130 - 1614684..1615166 (+) 483 WP_004194159.1 S-ribosylhomocysteine lyase -
  LIO32_RS08135 - 1615387..1616841 (-) 1455 WP_011921984.1 cell division site-positioning protein MapZ family protein -
  LIO32_RS08140 - 1616851..1618017 (-) 1167 WP_011921983.1 class I SAM-dependent RNA methyltransferase -
  LIO32_RS08150 gpsB 1618574..1618909 (-) 336 WP_004194167.1 cell division regulator GpsB -
  LIO32_RS08155 - 1618980..1619519 (-) 540 WP_004194171.1 DUF1273 domain-containing protein -
  LIO32_RS08160 recU 1619585..1620202 (+) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  LIO32_RS08165 pbp1a 1620183..1622357 (+) 2175 WP_226960411.1 penicillin-binding protein PBP1A -
  LIO32_RS08170 rsmG 1622416..1623129 (+) 714 WP_011921980.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LIO32_RS08175 - 1623171..1623374 (-) 204 WP_004195223.1 cold-shock protein -
  LIO32_RS08180 - 1623534..1624367 (-) 834 WP_024381722.1 energy-coupling factor transporter transmembrane protein EcfT -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=537335 LIO32_RS08160 WP_004194173.1 1619585..1620202(+) (recU) [Streptococcus suis strain Ssuis_MA2]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=537335 LIO32_RS08160 WP_004194173.1 1619585..1620202(+) (recU) [Streptococcus suis strain Ssuis_MA2]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473