Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   STRSA0001_RS00905 Genome accession   NZ_ACLO01000018
Coordinates   665..1327 (-) Length   220 a.a.
NCBI ID   WP_002883740.1    Uniprot ID   -
Organism   Streptococcus salivarius SK126     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..6327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRSA0001_RS00900 (STRSA0001_1714) hpf 38..586 (-) 549 WP_002883786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  STRSA0001_RS00905 (STRSA0001_1715) comFC/cflB 665..1327 (-) 663 WP_002883740.1 ComF family protein Machinery gene
  STRSA0001_RS00910 (STRSA0001_1716) comFA/cflA 1308..2627 (-) 1320 WP_002883821.1 DEAD/DEAH box helicase Machinery gene
  STRSA0001_RS00915 (STRSA0001_1717) - 2682..3308 (+) 627 WP_002883729.1 YigZ family protein -
  STRSA0001_RS00920 (STRSA0001_1718) cysK 3410..4336 (+) 927 WP_002883742.1 cysteine synthase A -
  STRSA0001_RS00925 (STRSA0001_1719) - 4515..5174 (-) 660 WP_002883751.1 CBS and ACT domain-containing protein -
  STRSA0001_RS00930 (STRSA0001_1720) - 5309..6019 (-) 711 WP_002883761.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26191.45 Da        Isoelectric Point: 8.7453

>NTDB_id=53727 STRSA0001_RS00905 WP_002883740.1 665..1327(-) (comFC/cflB) [Streptococcus salivarius SK126]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNNLKRFFKKGYTIVPVPLSEERLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTREERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYHMVQLLEAIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=53727 STRSA0001_RS00905 WP_002883740.1 665..1327(-) (comFC/cflB) [Streptococcus salivarius SK126]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAAAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGATATAAAAAA
TAATTTAAAACGATTTTTTAAAAAAGGTTATACCATAGTGCCGGTCCCATTGTCGGAAGAACGCTTGGTAGAAAGAGGGT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGTGAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCCACTTTATATCATATGGTTCAACTATTAGAAGCTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45

Multiple sequence alignment