Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   I6K87_RS02850 Genome accession   NZ_CP069892
Coordinates   577215..577904 (+) Length   229 a.a.
NCBI ID   WP_003024592.1    Uniprot ID   A0A0P0N8H2
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 572215..582904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS02830 (I6K87_02830) - 572886..574442 (-) 1557 WP_049534031.1 ClC family H(+)/Cl(-) exchange transporter -
  I6K87_RS02835 (I6K87_02835) - 574670..575398 (-) 729 WP_003024584.1 ABC transporter permease -
  I6K87_RS02840 (I6K87_02840) - 575395..576135 (-) 741 WP_204982741.1 ABC transporter permease -
  I6K87_RS02845 (I6K87_02845) - 576135..577043 (-) 909 WP_059220735.1 ABC transporter ATP-binding protein -
  I6K87_RS02850 (I6K87_02850) scnR 577215..577904 (+) 690 WP_003024592.1 response regulator transcription factor Regulator
  I6K87_RS02855 (I6K87_02855) scnK 577905..579215 (+) 1311 WP_021001669.1 sensor histidine kinase Regulator
  I6K87_RS02860 (I6K87_02860) nox 579512..580885 (-) 1374 WP_003029747.1 H2O-forming NADH oxidase -
  I6K87_RS02865 (I6K87_02865) - 581170..582099 (+) 930 WP_197017584.1 FAD:protein FMN transferase -
  I6K87_RS02870 (I6K87_02870) - 582119..582727 (+) 609 WP_003042854.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26267.57 Da        Isoelectric Point: 6.5039

>NTDB_id=537232 I6K87_RS02850 WP_003024592.1 577215..577904(+) (scnR) [Streptococcus anginosus strain FDAARGOS_1357]
MNYKEKKILILDDNPEILEMVQESLNIAGFSNLTSVQSQKEALEQFEEKSFDLVILDIMLPEGSGFEVLKGIRKTSTVPV
LFLSAISDIEKQYQGFELGADDYIIKPFRPRDLELRILSILKRAYPEKEDTLVLPACQVHFSQALITKGKLEIQLTAKEY
SILKVLYDNKNRIVTFDQLLEKVWGLQYQGYDNTLMAHIRKIRQKIEANPSKPESLITVKGLGYKLKVN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=537232 I6K87_RS02850 WP_003024592.1 577215..577904(+) (scnR) [Streptococcus anginosus strain FDAARGOS_1357]
ATGAATTATAAAGAAAAGAAGATCTTAATTTTAGACGATAACCCAGAAATTTTAGAAATGGTGCAAGAATCATTGAACAT
TGCTGGTTTTAGCAATCTAACAAGTGTACAATCACAAAAAGAAGCTTTGGAGCAATTTGAAGAAAAATCTTTTGATTTAG
TTATTTTAGACATTATGCTGCCTGAAGGATCAGGATTTGAAGTTTTAAAAGGTATCCGTAAGACTTCAACGGTTCCTGTT
TTGTTTTTGTCGGCAATCTCCGATATAGAAAAACAATATCAGGGCTTTGAGTTAGGGGCAGATGACTATATTATCAAGCC
TTTCCGCCCAAGAGATTTGGAGTTGCGTATTCTTTCCATCTTAAAAAGAGCCTATCCCGAAAAGGAAGATACCCTTGTTT
TGCCTGCTTGCCAGGTGCATTTTAGCCAAGCCTTGATTACCAAAGGAAAACTAGAGATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAGGTCTTATATGATAATAAGAATCGCATTGTTACTTTTGACCAACTCTTAGAAAAAGTCTGGGGCTTACA
ATACCAAGGCTATGATAATACCCTAATGGCTCATATTCGTAAGATTCGACAAAAGATCGAAGCCAATCCATCTAAACCAG
AAAGCTTAATAACGGTTAAAGGTTTGGGTTACAAACTAAAGGTGAATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P0N8H2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

87.773

100

0.878
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

37.069

100

0.376