Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   LIO31_RS07395 Genome accession   NZ_CP085086
Coordinates   1479397..1480131 (-) Length   244 a.a.
NCBI ID   WP_002943067.1    Uniprot ID   A0A0H3MU26
Organism   Streptococcus suis strain Ssuis_MA6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474397..1485131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIO31_RS07365 - 1474495..1475322 (-) 828 WP_012775002.1 class C sortase -
  LIO31_RS07370 - 1475290..1475679 (+) 390 Protein_1422 transposase -
  LIO31_RS07375 - 1475680..1476066 (-) 387 WP_011922052.1 hypothetical protein -
  LIO31_RS07380 lepB 1476085..1476687 (-) 603 WP_014636242.1 signal peptidase I -
  LIO31_RS07385 - 1476677..1476970 (-) 294 WP_002938694.1 hypothetical protein -
  LIO31_RS07390 - 1478419..1479267 (-) 849 WP_024405613.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  LIO31_RS07395 amiE 1479397..1480131 (-) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  LIO31_RS07400 - 1480124..1480813 (-) 690 WP_002938702.1 amino acid ABC transporter permease -
  LIO31_RS07405 - 1480939..1481169 (-) 231 WP_002938704.1 DUF1797 family protein -
  LIO31_RS07410 clpE 1481393..1483621 (+) 2229 WP_015646546.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  LIO31_RS07415 - 1483807..1484268 (+) 462 WP_226960899.1 NUDIX hydrolase -
  LIO31_RS07420 - 1484323..1484631 (+) 309 WP_002938710.1 DUF1827 family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26881.11 Da        Isoelectric Point: 4.7252

>NTDB_id=537232 LIO31_RS07395 WP_002943067.1 1479397..1480131(-) (amiE) [Streptococcus suis strain Ssuis_MA6]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=537232 LIO31_RS07395 WP_002943067.1 1479397..1480131(-) (amiE) [Streptococcus suis strain Ssuis_MA6]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAAGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CAAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAGCGGATCGCTATTGCACGTGGTCTGGCTATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTTATGCAGGATTTAGC
CAAGTCGGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MU26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365