Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6K12_RS12815 Genome accession   NZ_CP069865
Coordinates   2573614..2574150 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain FDAARGOS_1282     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2568614..2579150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K12_RS12795 (I6K12_12800) aphA 2568902..2569615 (+) 714 WP_001226928.1 acid phosphatase AphA -
  I6K12_RS12800 (I6K12_12805) yjbQ 2569726..2570142 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I6K12_RS12805 (I6K12_12810) yjbR 2570146..2570502 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  I6K12_RS12810 (I6K12_12815) uvrA 2570537..2573359 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  I6K12_RS12815 (I6K12_12820) ssb 2573614..2574150 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6K12_RS12820 (I6K12_12825) yjcB 2574249..2574530 (-) 282 WP_001295689.1 YjcB family protein -
  I6K12_RS12825 (I6K12_12830) pdeC 2574960..2576546 (+) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  I6K12_RS12830 (I6K12_12835) soxS 2576549..2576872 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  I6K12_RS12835 (I6K12_12840) soxR 2576958..2577422 (+) 465 WP_089502623.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=537155 I6K12_RS12815 WP_000168305.1 2573614..2574150(+) (ssb) [Escherichia coli strain FDAARGOS_1282]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=537155 I6K12_RS12815 WP_000168305.1 2573614..2574150(+) (ssb) [Escherichia coli strain FDAARGOS_1282]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489