Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AMBAS45_RS00955 | Genome accession | NC_018679 |
| Coordinates | 209764..210348 (+) | Length | 194 a.a. |
| NCBI ID | WP_014947881.1 | Uniprot ID | A0AB32ZTF8 |
| Organism | Alteromonas macleodii str. 'Balearic Sea AD45' | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 204764..215348
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMBAS45_RS00940 (AMBAS45_00925) | - | 205389..206444 (+) | 1056 | WP_014977984.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| AMBAS45_RS00945 (AMBAS45_00930) | galK | 206437..207576 (+) | 1140 | WP_014977985.1 | galactokinase | - |
| AMBAS45_RS00950 (AMBAS45_00935) | - | 207934..209496 (+) | 1563 | WP_014977986.1 | sodium/sugar symporter | - |
| AMBAS45_RS00955 (AMBAS45_00940) | ssb | 209764..210348 (+) | 585 | WP_014947881.1 | single-stranded DNA-binding protein | Machinery gene |
| AMBAS45_RS00960 (AMBAS45_00945) | - | 210557..211510 (+) | 954 | WP_014977987.1 | hypothetical protein | - |
| AMBAS45_RS00965 (AMBAS45_00950) | - | 211690..212976 (+) | 1287 | WP_216600657.1 | alpha/beta hydrolase family protein | - |
| AMBAS45_RS00970 (AMBAS45_00955) | - | 213147..214244 (+) | 1098 | WP_014977989.1 | tetratricopeptide repeat protein | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21128.03 Da Isoelectric Point: 4.9658
>NTDB_id=53703 AMBAS45_RS00955 WP_014947881.1 209764..210348(+) (ssb) [Alteromonas macleodii str. 'Balearic Sea AD45']
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF
Nucleotide
Download Length: 585 bp
>NTDB_id=53703 AMBAS45_RS00955 WP_014947881.1 209764..210348(+) (ssb) [Alteromonas macleodii str. 'Balearic Sea AD45']
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGCCAAGATAAATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGAAGGCGGTGGCGGTAACGGTGGTTACCAACGTCCTCAGAACAACCAAGGTGGTTACA
ACCAGGCGCCTGCACAAGGCGGTTATAACCAAGCGCCACAGCAAGGTGGTGGCCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGCGGCTACAATCAAGCGCCTCAGGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTTTAA
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGCAAGGCCAAGATAAATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGAAGGCGGTGGCGGTAACGGTGGTTACCAACGTCCTCAGAACAACCAAGGTGGTTACA
ACCAGGCGCCTGCACAAGGCGGTTATAACCAAGCGCCACAGCAAGGTGGTGGCCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGCGGCTACAATCAAGCGCCTCAGGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56 |
100 |
0.577 |
| ssb | Vibrio cholerae strain A1552 |
54.5 |
100 |
0.562 |
| ssb | Neisseria meningitidis MC58 |
46.354 |
98.969 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
46.354 |
98.969 |
0.459 |