Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6K56_RS02425 | Genome accession | NZ_CP069821 |
| Coordinates | 507320..507844 (+) | Length | 174 a.a. |
| NCBI ID | WP_004151744.1 | Uniprot ID | - |
| Organism | Klebsiella pneumoniae strain FDAARGOS_1326 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 483754..539632 | 507320..507844 | within | 0 |
Gene organization within MGE regions
Location: 483754..539632
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K56_RS02310 (I6K56_02310) | malK | 483754..484863 (+) | 1110 | WP_002884743.1 | maltose/maltodextrin ABC transporter ATP-binding protein MalK | - |
| I6K56_RS02315 (I6K56_02315) | - | 484947..486236 (+) | 1290 | WP_002884747.1 | maltoporin | - |
| I6K56_RS02320 (I6K56_02320) | malM | 486351..487274 (+) | 924 | WP_004151749.1 | maltose operon protein MalM | - |
| I6K56_RS02325 (I6K56_02325) | ubiC | 487462..487959 (+) | 498 | WP_002884807.1 | chorismate lyase | - |
| I6K56_RS02330 (I6K56_02330) | ubiA | 487972..488838 (+) | 867 | WP_032433759.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| I6K56_RS02335 (I6K56_02335) | plsB | 488887..491310 (-) | 2424 | WP_004178269.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| I6K56_RS02340 (I6K56_02340) | - | 491439..491807 (+) | 369 | WP_002884819.1 | diacylglycerol kinase | - |
| I6K56_RS02345 (I6K56_02345) | lexA | 491930..492538 (+) | 609 | WP_002884822.1 | transcriptional repressor LexA | - |
| I6K56_RS02350 (I6K56_02350) | dinF | 492608..493924 (+) | 1317 | WP_004151748.1 | MATE family efflux transporter DinF | - |
| I6K56_RS02355 (I6K56_02355) | - | 493944..494093 (-) | 150 | WP_004219133.1 | hypothetical protein | - |
| I6K56_RS02360 (I6K56_02360) | - | 494159..494368 (+) | 210 | WP_004151747.1 | CsbD family protein | - |
| I6K56_RS02365 (I6K56_02365) | zur | 494464..494979 (-) | 516 | WP_002884931.1 | zinc uptake transcriptional repressor Zur | - |
| I6K56_RS02370 (I6K56_02370) | - | 495229..495717 (+) | 489 | WP_002884935.1 | cupin domain-containing protein | - |
| I6K56_RS02375 (I6K56_02375) | dusA | 495818..496816 (+) | 999 | WP_025368550.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| I6K56_RS02380 (I6K56_02380) | pspG | 496956..497198 (+) | 243 | WP_009484997.1 | envelope stress response protein PspG | - |
| I6K56_RS02385 (I6K56_02385) | - | 497381..498364 (-) | 984 | WP_002884941.1 | quinone oxidoreductase | - |
| I6K56_RS02390 (I6K56_02390) | dnaB | 498534..499949 (+) | 1416 | WP_002884942.1 | replicative DNA helicase | - |
| I6K56_RS02395 (I6K56_02395) | alr | 499981..501060 (+) | 1080 | WP_002884943.1 | alanine racemase | - |
| I6K56_RS02400 (I6K56_02400) | tyrB | 501237..502430 (+) | 1194 | WP_002884946.1 | aromatic amino acid transaminase | - |
| I6K56_RS02405 (I6K56_02405) | aphA | 502622..503335 (+) | 714 | WP_004151745.1 | acid phosphatase AphA | - |
| I6K56_RS02410 (I6K56_02410) | - | 503466..503882 (+) | 417 | WP_002884951.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| I6K56_RS02415 (I6K56_02415) | - | 503886..504242 (+) | 357 | WP_002884953.1 | MmcQ/YjbR family DNA-binding protein | - |
| I6K56_RS02420 (I6K56_02420) | uvrA | 504243..507068 (-) | 2826 | WP_004146620.1 | excinuclease ABC subunit UvrA | - |
| I6K56_RS02425 (I6K56_02425) | ssb | 507320..507844 (+) | 525 | WP_004151744.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| I6K56_RS02430 (I6K56_02430) | - | 507969..509549 (-) | 1581 | WP_032433760.1 | lytic transglycosylase F | - |
| I6K56_RS02435 (I6K56_02435) | - | 510088..511056 (-) | 969 | WP_076026135.1 | IS5-like element IS903B family transposase | - |
| I6K56_RS02440 (I6K56_02440) | - | 511380..511709 (+) | 330 | WP_000493286.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| I6K56_RS02445 (I6K56_02445) | - | 511690..511971 (+) | 282 | WP_000780222.1 | helix-turn-helix domain-containing protein | - |
| I6K56_RS02450 (I6K56_02450) | - | 512118..512594 (-) | 477 | WP_194164765.1 | DUF4113 domain-containing protein | - |
| I6K56_RS02455 (I6K56_02455) | - | 512684..514198 (-) | 1515 | Protein_462 | Tn3-like element TnAs1 family transposase | - |
| I6K56_RS02460 (I6K56_02460) | - | 514264..514968 (+) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| I6K56_RS27060 | - | 515084..515305 (+) | 222 | Protein_464 | resolvase | - |
| I6K56_RS02465 (I6K56_02465) | - | 515491..517749 (+) | 2259 | WP_004177845.1 | TonB-dependent siderophore receptor | - |
| I6K56_RS02470 (I6K56_02470) | - | 518013..518381 (-) | 369 | WP_032433761.1 | helix-turn-helix transcriptional regulator | - |
| I6K56_RS02475 (I6K56_02475) | - | 518415..520175 (-) | 1761 | WP_032433762.1 | tannase/feruloyl esterase family alpha/beta hydrolase | - |
| I6K56_RS02480 (I6K56_02480) | - | 520549..520779 (-) | 231 | WP_032417717.1 | potassium:proton antiporter | - |
| I6K56_RS02485 (I6K56_02485) | bamA | 520801..523224 (+) | 2424 | WP_032433763.1 | outer membrane protein assembly factor BamA | - |
| I6K56_RS02490 (I6K56_02490) | iraM | 523776..524129 (+) | 354 | WP_002885039.1 | anti-adapter protein IraM | - |
| I6K56_RS02495 (I6K56_02495) | - | 524168..524929 (-) | 762 | WP_004177841.1 | inositol monophosphatase family protein | - |
| I6K56_RS02500 (I6K56_02500) | - | 524940..525953 (-) | 1014 | WP_002885046.1 | LacI family DNA-binding transcriptional regulator | - |
| I6K56_RS02505 (I6K56_02505) | - | 525950..526720 (-) | 771 | WP_032433765.1 | MBL fold metallo-hydrolase | - |
| I6K56_RS02510 (I6K56_02510) | - | 526884..527915 (+) | 1032 | WP_004177837.1 | ABC transporter ATP-binding protein | - |
| I6K56_RS02515 (I6K56_02515) | - | 527945..529084 (+) | 1140 | WP_004177835.1 | extracellular solute-binding protein | - |
| I6K56_RS02520 (I6K56_02520) | - | 529145..529978 (+) | 834 | WP_004177833.1 | ABC transporter permease | - |
| I6K56_RS02525 (I6K56_02525) | - | 529975..530832 (+) | 858 | WP_020802409.1 | ABC transporter permease | - |
| I6K56_RS02530 (I6K56_02530) | - | 530879..531160 (-) | 282 | WP_002885064.1 | YjcB family protein | - |
| I6K56_RS02535 (I6K56_02535) | - | 531667..533271 (+) | 1605 | WP_023283136.1 | EAL domain-containing protein | - |
| I6K56_RS02540 (I6K56_02540) | soxS | 533256..533585 (-) | 330 | WP_004151738.1 | superoxide response transcriptional regulator SoxS | - |
| I6K56_RS02545 (I6K56_02545) | soxR | 533670..534128 (+) | 459 | WP_002885077.1 | redox-sensitive transcriptional activator SoxR | - |
| I6K56_RS02550 (I6K56_02550) | - | 534388..535056 (+) | 669 | WP_032433766.1 | glutathione S-transferase family protein | - |
| I6K56_RS02555 (I6K56_02555) | - | 535445..536794 (+) | 1350 | WP_002885079.1 | NCS2 family permease | - |
| I6K56_RS02560 (I6K56_02560) | - | 536942..538588 (+) | 1647 | WP_002885082.1 | Na+/H+ antiporter | - |
| I6K56_RS02565 (I6K56_02565) | - | 538751..539632 (-) | 882 | WP_004177821.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18711.70 Da Isoelectric Point: 5.2358
>NTDB_id=536917 I6K56_RS02425 WP_004151744.1 507320..507844(+) (ssb) [Klebsiella pneumoniae strain FDAARGOS_1326]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=536917 I6K56_RS02425 WP_004151744.1 507320..507844(+) (ssb) [Klebsiella pneumoniae strain FDAARGOS_1326]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCGCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCCCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGACATCCCGTTCTAA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCGCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCCCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGACATCCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
75 |
100 |
0.776 |
| ssb | Glaesserella parasuis strain SC1401 |
59.239 |
100 |
0.626 |
| ssb | Neisseria meningitidis MC58 |
48.603 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
48.603 |
100 |
0.5 |