Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G9395_RS25565 Genome accession   NZ_CP069815
Coordinates   5405988..5406515 (-) Length   175 a.a.
NCBI ID   WP_004856483.1    Uniprot ID   A0AAP1MZU7
Organism   Raoultella planticola strain HH15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5400988..5411515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9395_RS25555 (G9395_025555) - 5401400..5403661 (-) 2262 WP_046853252.1 TonB-dependent siderophore receptor -
  G9395_RS25560 (G9395_025560) - 5404339..5405889 (+) 1551 WP_094898342.1 lytic transglycosylase F -
  G9395_RS25565 (G9395_025565) ssb 5405988..5406515 (-) 528 WP_004856483.1 single-stranded DNA-binding protein SSB1 Machinery gene
  G9395_RS25570 (G9395_025570) uvrA 5406762..5409587 (+) 2826 WP_032689935.1 excinuclease ABC subunit UvrA -
  G9395_RS25575 (G9395_025575) - 5409588..5409944 (-) 357 WP_032689936.1 MmcQ/YjbR family DNA-binding protein -
  G9395_RS25580 (G9395_025580) - 5409948..5410364 (-) 417 WP_032689937.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  G9395_RS25585 (G9395_025585) aphA 5410510..5411220 (-) 711 WP_032689939.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18790.84 Da        Isoelectric Point: 5.2456

>NTDB_id=536892 G9395_RS25565 WP_004856483.1 5405988..5406515(-) (ssb) [Raoultella planticola strain HH15]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEIVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=536892 G9395_RS25565 WP_004856483.1 5405988..5406515(-) (ssb) [Raoultella planticola strain HH15]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGCCAGCTGCGTACCCGTAAATGGACTGACCAGTCTGGTCAGGAAAAATACACCACCGAGATCGTGGTTAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCGGGCGCTCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTTAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGGCACCGGCAGCA
CCTTCTAACGAACCGCCGATGGATTTCGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.766
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.617
  ssb Neisseria meningitidis MC58

48.603

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.497