Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JTE92_RS13980 Genome accession   NZ_CP069812
Coordinates   350585..351139 (+) Length   184 a.a.
NCBI ID   WP_063236696.1    Uniprot ID   A0A976BCJ7
Organism   Cupriavidus oxalaticus strain Ox1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 345585..356139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JTE92_RS13970 (JTE92_13970) uvrA 345826..348690 (-) 2865 WP_063236694.1 excinuclease ABC subunit UvrA -
  JTE92_RS13975 (JTE92_13975) - 349071..350321 (+) 1251 WP_063236695.1 MFS transporter -
  JTE92_RS13980 (JTE92_13980) ssb 350585..351139 (+) 555 WP_063236696.1 single-stranded DNA-binding protein Machinery gene
  JTE92_RS30435 - 351330..351437 (+) 108 WP_232353340.1 hypothetical protein -
  JTE92_RS13990 (JTE92_13990) - 351473..352291 (-) 819 WP_063236697.1 IclR family transcriptional regulator C-terminal domain-containing protein -
  JTE92_RS13995 (JTE92_13995) - 352426..353412 (+) 987 WP_116386745.1 tripartite tricarboxylate transporter substrate binding protein -
  JTE92_RS14000 (JTE92_14000) - 353463..354377 (+) 915 WP_063236698.1 SDR family NAD(P)-dependent oxidoreductase -
  JTE92_RS14005 (JTE92_14005) - 354397..355296 (+) 900 WP_063236699.1 MaoC/PaaZ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19053.73 Da        Isoelectric Point: 5.9517

>NTDB_id=536861 JTE92_RS13980 WP_063236696.1 350585..351139(+) (ssb) [Cupriavidus oxalaticus strain Ox1]
MASVNKVILVGNLGADPETRYMPSGDAVTNLRLATTDRYKDKQSGEMKEATEWHRVSMFGKLAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGGGGGGGDEGGYGGGGGGGGYSRESQGGGGGGYGGGRGGQGGQGGGQS
GGGARRPQQAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=536861 JTE92_RS13980 WP_063236696.1 350585..351139(+) (ssb) [Cupriavidus oxalaticus strain Ox1]
ATGGCCTCGGTCAACAAAGTCATTCTCGTCGGCAATCTCGGCGCCGACCCCGAAACCCGCTACATGCCCAGCGGCGACGC
CGTCACCAACCTCCGCCTGGCAACCACCGATCGCTACAAGGACAAGCAGTCCGGCGAGATGAAGGAAGCCACCGAGTGGC
ACCGCGTTTCGATGTTCGGCAAGCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGTCGGTCTATATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACAAGTACTCGACCGAAATCGTTGCCGACCAGATGCAGAT
GCTGGGTTCGCGCCAGGGTGGCGGCGGTGGTGGCGGCGATGAAGGCGGCTATGGCGGCGGCGGTGGCGGTGGCGGCTACA
GCCGTGAATCGCAGGGCGGCGGCGGCGGTGGTTACGGCGGCGGCCGTGGCGGCCAGGGCGGCCAGGGCGGCGGCCAGAGT
GGTGGCGGCGCTCGTCGTCCGCAGCAGGCGCCGTCGAATGGTTTCGAGGATATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.769

100

0.538
  ssb Glaesserella parasuis strain SC1401

50.526

100

0.522
  ssb Neisseria meningitidis MC58

44.809

99.457

0.446
  ssb Neisseria gonorrhoeae MS11

44.262

99.457

0.44