Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AMEC673_RS00970 | Genome accession | NC_018678 |
| Coordinates | 215659..216243 (+) | Length | 194 a.a. |
| NCBI ID | WP_014947881.1 | Uniprot ID | A0AB32ZTF8 |
| Organism | Alteromonas macleodii str. 'English Channel 673' | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 210659..221243
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMEC673_RS00955 (AMEC673_00940) | - | 211285..212340 (+) | 1056 | WP_014975372.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| AMEC673_RS00960 (AMEC673_00945) | galK | 212333..213472 (+) | 1140 | WP_014975373.1 | galactokinase | - |
| AMEC673_RS00965 (AMEC673_00950) | - | 213829..215391 (+) | 1563 | WP_014975374.1 | sodium/sugar symporter | - |
| AMEC673_RS00970 (AMEC673_00955) | ssb | 215659..216243 (+) | 585 | WP_014947881.1 | single-stranded DNA-binding protein | Machinery gene |
| AMEC673_RS00975 (AMEC673_00960) | - | 216452..217405 (+) | 954 | WP_014975375.1 | hypothetical protein | - |
| AMEC673_RS00980 (AMEC673_00965) | - | 217546..218871 (+) | 1326 | WP_014947883.1 | alpha/beta hydrolase family protein | - |
| AMEC673_RS00985 (AMEC673_00970) | - | 218945..221074 (-) | 2130 | WP_014975376.1 | alpha-galactosidase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21128.03 Da Isoelectric Point: 4.9658
>NTDB_id=53686 AMEC673_RS00970 WP_014947881.1 215659..216243(+) (ssb) [Alteromonas macleodii str. 'English Channel 673']
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDKYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF
Nucleotide
Download Length: 585 bp
>NTDB_id=53686 AMEC673_RS00970 WP_014947881.1 215659..216243(+) (ssb) [Alteromonas macleodii str. 'English Channel 673']
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAAACACGTAAGTGGCAAGATCAGCAAGGCCAAGATAAATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGAAGGCGGTGGTGGTAACGGTGGTTACCAACGTCCTCAGAACAACCAAGGTGGTTACA
ACCAGGCGCCTGCACAAGGCGGTTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGCGGCTACAATCAAGCGCCTCAAGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTCTAA
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAAACACGTAAGTGGCAAGATCAGCAAGGCCAAGATAAATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGCGGTCGCGGCGGTGAAGGCGGTGGTGGTAACGGTGGTTACCAACGTCCTCAGAACAACCAAGGTGGTTACA
ACCAGGCGCCTGCACAAGGCGGTTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGCGGCTACAATCAAGCGCCTCAAGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56 |
100 |
0.577 |
| ssb | Vibrio cholerae strain A1552 |
54.5 |
100 |
0.562 |
| ssb | Neisseria meningitidis MC58 |
46.354 |
98.969 |
0.459 |
| ssb | Neisseria gonorrhoeae MS11 |
46.354 |
98.969 |
0.459 |