Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | JS513_RS01620 | Genome accession | NZ_CP069799 |
| Coordinates | 363580..364083 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain 014S_SA | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 363580..384980 | 363580..364083 | within | 0 |
Gene organization within MGE regions
Location: 363580..384980
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JS513_RS01620 (JS513_01620) | ssbA | 363580..364083 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| JS513_RS01625 (JS513_01625) | rpsR | 364135..364377 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| JS513_RS01630 (JS513_01630) | - | 364559..365389 (-) | 831 | WP_000357932.1 | KilA-N domain-containing protein | - |
| JS513_RS01635 (JS513_01635) | - | 365872..367089 (-) | 1218 | WP_000270125.1 | tyrosine-type recombinase/integrase | - |
| JS513_RS01640 (JS513_01640) | - | 367115..368038 (-) | 924 | WP_050436923.1 | helix-turn-helix transcriptional regulator | - |
| JS513_RS01645 (JS513_01645) | - | 368145..368345 (+) | 201 | WP_001033058.1 | helix-turn-helix domain-containing protein | - |
| JS513_RS01650 (JS513_01650) | - | 368384..368596 (+) | 213 | WP_000551774.1 | helix-turn-helix transcriptional regulator | - |
| JS513_RS01655 (JS513_01655) | - | 368597..368869 (+) | 273 | WP_001138301.1 | helix-turn-helix domain-containing protein | - |
| JS513_RS01660 (JS513_01660) | - | 368881..369054 (+) | 174 | WP_072470692.1 | pathogenicity island protein | - |
| JS513_RS01665 (JS513_01665) | - | 369021..369224 (+) | 204 | WP_001231389.1 | hypothetical protein | - |
| JS513_RS01670 (JS513_01670) | - | 369226..369609 (+) | 384 | WP_000695070.1 | hypothetical protein | - |
| JS513_RS01675 (JS513_01675) | - | 369610..369930 (+) | 321 | WP_001103951.1 | DUF1474 family protein | - |
| JS513_RS01680 (JS513_01680) | - | 369996..370865 (+) | 870 | WP_001002727.1 | primase alpha helix C-terminal domain-containing protein | - |
| JS513_RS01685 (JS513_01685) | - | 370882..372351 (+) | 1470 | WP_031928070.1 | virulence-associated E family protein | - |
| JS513_RS01690 (JS513_01690) | - | 372630..372992 (+) | 363 | WP_001039165.1 | hypothetical protein | - |
| JS513_RS01695 (JS513_01695) | - | 372985..373257 (+) | 273 | WP_000477476.1 | hypothetical protein | - |
| JS513_RS01700 (JS513_01700) | - | 373259..373900 (+) | 642 | WP_001019288.1 | hypothetical protein | - |
| JS513_RS01705 (JS513_01705) | - | 374436..374777 (+) | 342 | WP_001190614.1 | hypothetical protein | - |
| JS513_RS01710 (JS513_01710) | - | 374808..375461 (+) | 654 | WP_000214169.1 | hypothetical protein | - |
| JS513_RS01715 (JS513_01715) | - | 375514..376041 (+) | 528 | WP_000771369.1 | spore coat protein | - |
| JS513_RS01720 (JS513_01720) | - | 376044..376385 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| JS513_RS01725 (JS513_01725) | - | 376382..376951 (+) | 570 | WP_001293089.1 | terminase small subunit | - |
| JS513_RS01730 (JS513_01730) | seb | 377259..378059 (+) | 801 | WP_000278086.1 | staphylococcal enterotoxin type B | - |
| JS513_RS01735 (JS513_01735) | - | 378137..378694 (-) | 558 | WP_001035617.1 | DUF4888 domain-containing protein | - |
| JS513_RS01740 (JS513_01740) | - | 379226..379483 (+) | 258 | WP_000877056.1 | hypothetical protein | - |
| JS513_RS01745 (JS513_01745) | - | 380029..380967 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| JS513_RS01750 (JS513_01750) | - | 381006..381718 (-) | 713 | Protein_350 | site-specific integrase | - |
| JS513_RS01755 (JS513_01755) | selX | 381924..382535 (+) | 612 | WP_000473944.1 | staphylococcal enterotoxin-like toxin X | - |
| JS513_RS01760 (JS513_01760) | - | 382904..383272 (+) | 369 | WP_000849174.1 | YxeA family protein | - |
| JS513_RS01765 (JS513_01765) | - | 383453..384025 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| JS513_RS01770 (JS513_01770) | - | 384163..384426 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| JS513_RS01775 (JS513_01775) | - | 384726..384980 (+) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=536769 JS513_RS01620 WP_000934799.1 363580..364083(+) (ssbA) [Staphylococcus aureus strain 014S_SA]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=536769 JS513_RS01620 WP_000934799.1 363580..364083(+) (ssbA) [Staphylococcus aureus strain 014S_SA]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |