Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   JQU52_RS14065 Genome accession   NZ_CP069798
Coordinates   2781173..2781475 (-) Length   100 a.a.
NCBI ID   WP_230339080.1    Uniprot ID   A0A892ZLL2
Organism   Paralysiella testudinis strain 26B     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2776173..2786475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQU52_RS14035 (JQU52_14035) - 2776433..2777035 (+) 603 WP_230339074.1 DDE-type integrase/transposase/recombinase -
  JQU52_RS14040 (JQU52_14040) - 2777263..2777721 (-) 459 WP_230339075.1 hypothetical protein -
  JQU52_RS14045 (JQU52_14045) - 2777830..2778195 (-) 366 WP_230339076.1 STAS/SEC14 domain-containing protein -
  JQU52_RS14050 (JQU52_14050) - 2778405..2779274 (-) 870 WP_230339077.1 DMT family transporter -
  JQU52_RS14055 (JQU52_14055) ftsB 2779363..2779644 (-) 282 WP_230339078.1 cell division protein FtsB -
  JQU52_RS14060 (JQU52_14060) eno 2779663..2780946 (-) 1284 WP_230339079.1 phosphopyruvate hydratase -
  JQU52_RS14065 (JQU52_14065) comE 2781173..2781475 (-) 303 WP_230339080.1 ComEA family DNA-binding protein Machinery gene
  JQU52_RS14070 (JQU52_14070) - 2781612..2783027 (-) 1416 WP_230339081.1 PhoH family protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10482.32 Da        Isoelectric Point: 10.6825

>NTDB_id=536766 JQU52_RS14065 WP_230339080.1 2781173..2781475(-) (comE) [Paralysiella testudinis strain 26B]
MKKFLFLVISLFSLSWALAAVNINTASVQELQTLPNIGPAKAQAIVEYRTQHGGFKSIEEIQKVKGIGAATFEKMKADIS
VGGGAKPAAAKPAAAKPATK

Nucleotide


Download         Length: 303 bp        

>NTDB_id=536766 JQU52_RS14065 WP_230339080.1 2781173..2781475(-) (comE) [Paralysiella testudinis strain 26B]
ATGAAGAAGTTTTTATTTCTGGTGATTTCATTGTTTAGCTTGTCATGGGCGCTGGCTGCGGTGAACATCAATACCGCCAG
TGTGCAGGAACTGCAAACCTTGCCCAATATCGGCCCGGCCAAGGCGCAGGCGATTGTGGAATACCGCACCCAACATGGCG
GCTTTAAATCGATTGAAGAGATTCAAAAAGTGAAAGGCATTGGGGCAGCCACATTTGAAAAAATGAAAGCCGATATCAGT
GTTGGCGGTGGCGCCAAGCCTGCAGCAGCCAAACCGGCAGCGGCCAAACCGGCAACAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.609

92

0.53
  comE Neisseria gonorrhoeae MS11

57.609

92

0.53
  comE Neisseria gonorrhoeae MS11

57.609

92

0.53
  comE Neisseria gonorrhoeae MS11

57.609

92

0.53
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.852

81

0.42
  comEA Vibrio campbellii strain DS40M4

43.182

88

0.38