Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQU52_RS07050 Genome accession   NZ_CP069798
Coordinates   1365855..1366355 (+) Length   166 a.a.
NCBI ID   WP_230340407.1    Uniprot ID   A0A892ZKY0
Organism   Paralysiella testudinis strain 26B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1360855..1371355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQU52_RS07025 (JQU52_07050) pyrC 1361167..1362207 (+) 1041 WP_230340402.1 dihydroorotase -
  JQU52_RS07030 (JQU52_07055) - 1362197..1362838 (+) 642 WP_230340403.1 hypothetical protein -
  JQU52_RS07035 (JQU52_07060) - 1362852..1363697 (+) 846 WP_230340404.1 YwqG family protein -
  JQU52_RS07040 (JQU52_07065) - 1363716..1364324 (+) 609 WP_230340405.1 lytic transglycosylase domain-containing protein -
  JQU52_RS07045 (JQU52_07070) - 1364469..1365851 (+) 1383 WP_230340406.1 MFS transporter -
  JQU52_RS07050 (JQU52_07075) ssb 1365855..1366355 (+) 501 WP_230340407.1 single-stranded DNA-binding protein Machinery gene
  JQU52_RS07055 (JQU52_07080) greA 1366739..1367215 (+) 477 WP_230340408.1 transcription elongation factor GreA -
  JQU52_RS07060 (JQU52_07085) - 1367439..1367885 (+) 447 WP_230340409.1 DUF4149 domain-containing protein -
  JQU52_RS07065 (JQU52_07090) yhbY 1367952..1368236 (-) 285 WP_230340410.1 ribosome assembly RNA-binding protein YhbY -
  JQU52_RS07070 (JQU52_07095) - 1368398..1369018 (+) 621 WP_230340411.1 RlmE family RNA methyltransferase -
  JQU52_RS07075 (JQU52_07100) ftsH 1369088..1371148 (+) 2061 WP_230340412.1 ATP-dependent zinc metalloprotease FtsH -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18371.37 Da        Isoelectric Point: 5.9648

>NTDB_id=536751 JQU52_RS07050 WP_230340407.1 1365855..1366355(+) (ssb) [Paralysiella testudinis strain 26B]
MSVNKVILVGRLGRDPEVRYMPNGEAVANFSIATDEQWKDRDGNRQTRTEWHNITLYRKLGEIAGQYLRKGGLVYIEGRI
QSRKYTGKDGVERTAYEIIGNEMKMLGSKSDNAGGGNYQEPQGGDYGQSQSYNAPAPAAAPPAAPRRQENRPAPAPVDDI
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=536751 JQU52_RS07050 WP_230340407.1 1365855..1366355(+) (ssb) [Paralysiella testudinis strain 26B]
ATGTCTGTAAATAAAGTAATTTTGGTCGGCCGTCTTGGCCGCGACCCGGAAGTGCGCTATATGCCCAACGGCGAAGCCGT
GGCCAATTTTTCCATCGCCACCGACGAGCAATGGAAAGACCGCGACGGCAACCGCCAAACCCGCACCGAATGGCACAACA
TCACCCTTTACCGCAAACTGGGCGAAATTGCCGGGCAGTATTTGCGCAAGGGCGGTTTGGTGTACATCGAAGGGCGTATT
CAGAGCCGCAAATACACCGGTAAAGACGGCGTAGAGCGCACCGCCTACGAGATTATCGGCAACGAAATGAAAATGCTCGG
CAGCAAGAGTGATAATGCCGGTGGCGGCAATTATCAAGAGCCGCAAGGCGGTGATTACGGCCAGTCCCAATCCTACAACG
CCCCCGCGCCTGCAGCGGCACCGCCCGCTGCCCCGCGCCGCCAAGAAAATCGCCCGGCACCGGCACCGGTGGACGATATC
GACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

69.274

100

0.747
  ssb Neisseria gonorrhoeae MS11

66.48

100

0.717
  ssb Vibrio cholerae strain A1552

47.159

100

0.5
  ssb Glaesserella parasuis strain SC1401

44.324

100

0.494