Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQU52_RS06325 Genome accession   NZ_CP069798
Coordinates   1234762..1235235 (+) Length   157 a.a.
NCBI ID   WP_230340111.1    Uniprot ID   A0A892ZIG0
Organism   Paralysiella testudinis strain 26B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1229762..1240235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQU52_RS06300 (JQU52_06330) - 1230352..1231698 (+) 1347 WP_230340283.1 cytochrome bc complex cytochrome b subunit -
  JQU52_RS06305 (JQU52_06335) - 1231713..1232501 (+) 789 WP_230340284.1 cytochrome c1 -
  JQU52_RS06310 (JQU52_06340) - 1232679..1233284 (+) 606 WP_230340285.1 glutathione S-transferase N-terminal domain-containing protein -
  JQU52_RS06315 (JQU52_06345) - 1233382..1233858 (+) 477 WP_230340286.1 ClpXP protease specificity-enhancing factor -
  JQU52_RS06320 (JQU52_06350) - 1233980..1234498 (+) 519 WP_230340287.1 hypothetical protein -
  JQU52_RS06325 (JQU52_06355) ssb 1234762..1235235 (+) 474 WP_230340111.1 single-stranded DNA-binding protein Machinery gene
  JQU52_RS06330 (JQU52_06360) - 1235245..1235760 (+) 516 WP_230340288.1 hypothetical protein -
  JQU52_RS06335 - 1235750..1236148 (+) 399 WP_230340534.1 transglycosylase SLT domain-containing protein -
  JQU52_RS06340 - 1236314..1236547 (+) 234 WP_230340289.1 hypothetical protein -
  JQU52_RS06345 (JQU52_06370) - 1236756..1237067 (+) 312 WP_230340114.1 TrbC/VirB2 family protein -
  JQU52_RS06350 - 1237077..1237271 (+) 195 WP_230340290.1 hypothetical protein -
  JQU52_RS06355 - 1237418..1237639 (+) 222 WP_230340291.1 hypothetical protein -
  JQU52_RS06360 - 1237664..1238737 (+) 1074 WP_230340292.1 hypothetical protein -
  JQU52_RS06365 - 1238712..1239182 (+) 471 WP_230340293.1 hypothetical protein -
  JQU52_RS06370 (JQU52_06385) - 1239320..1239559 (+) 240 WP_230340294.1 type II toxin-antitoxin system ParD family antitoxin -
  JQU52_RS06375 (JQU52_06390) - 1239552..1239839 (+) 288 WP_230340295.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17498.77 Da        Isoelectric Point: 7.1664

>NTDB_id=536747 JQU52_RS06325 WP_230340111.1 1234762..1235235(+) (ssb) [Paralysiella testudinis strain 26B]
MTVNKVQLIGRLGRDPEVRYMPNGDAVCHFSIATEEQWKDRDGNRQTRTEWHSIVLYRKLGEIAGQYLRKGGLVYIDGRI
QSRKYTGKDGVERTAYEIIGNEMKMLGSKELGVKAANRPAEEAQPQATPSAMPPVGGQSSQRPAPVPVDDIDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=536747 JQU52_RS06325 WP_230340111.1 1234762..1235235(+) (ssb) [Paralysiella testudinis strain 26B]
ATGACTGTGAACAAAGTCCAACTTATCGGCCGCCTCGGGCGCGACCCGGAAGTACGCTATATGCCCAACGGCGATGCCGT
ATGCCATTTTTCCATTGCCACTGAAGAACAGTGGAAAGACCGTGACGGCAACCGTCAAACCCGCACCGAATGGCACAGCA
TCGTGTTGTACCGCAAGCTGGGCGAAATCGCCGGGCAATATTTGCGCAAAGGTGGTTTGGTTTACATTGACGGACGCATT
CAGAGCCGTAAATACACCGGCAAAGACGGGGTGGAACGTACTGCGTATGAAATCATCGGTAACGAAATGAAAATGCTCGG
CAGCAAGGAGCTTGGCGTGAAGGCTGCAAACCGCCCGGCTGAGGAGGCTCAACCTCAAGCTACACCGTCGGCAATGCCGC
CTGTTGGTGGTCAAAGCAGTCAGCGGCCAGCCCCCGTACCTGTGGATGATATTGACGACGACATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

59.77

100

0.662
  ssb Neisseria gonorrhoeae MS11

58.621

100

0.65
  ssb Vibrio cholerae strain A1552

44.767

100

0.49
  ssb Glaesserella parasuis strain SC1401

40.113

100

0.452