Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JQU52_RS05390 | Genome accession | NZ_CP069798 |
| Coordinates | 1062871..1063344 (+) | Length | 157 a.a. |
| NCBI ID | WP_230340111.1 | Uniprot ID | A0A892ZIG0 |
| Organism | Paralysiella testudinis strain 26B | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1062617..1127893 | 1062871..1063344 | within | 0 |
Gene organization within MGE regions
Location: 1062617..1127893
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JQU52_RS05390 (JQU52_05420) | ssb | 1062871..1063344 (+) | 474 | WP_230340111.1 | single-stranded DNA-binding protein | Machinery gene |
| JQU52_RS05395 (JQU52_05425) | - | 1063429..1064196 (+) | 768 | WP_230340112.1 | hypothetical protein | - |
| JQU52_RS05400 (JQU52_05430) | - | 1064193..1064984 (+) | 792 | WP_230340113.1 | lytic transglycosylase domain-containing protein | - |
| JQU52_RS05405 (JQU52_05435) | - | 1065194..1065505 (+) | 312 | WP_230340114.1 | TrbC/VirB2 family protein | - |
| JQU52_RS05410 | - | 1065515..1065949 (+) | 435 | WP_230340115.1 | VirB3 family type IV secretion system protein | - |
| JQU52_RS05415 (JQU52_05440) | - | 1065993..1068272 (+) | 2280 | WP_407947614.1 | conjugal transfer protein | - |
| JQU52_RS05420 (JQU52_05445) | - | 1068429..1068644 (-) | 216 | WP_230340117.1 | hypothetical protein | - |
| JQU52_RS05425 (JQU52_05450) | - | 1068835..1069491 (+) | 657 | WP_230340118.1 | type IV secretion system protein | - |
| JQU52_RS05430 (JQU52_05455) | - | 1069554..1070495 (+) | 942 | WP_230340119.1 | type IV secretion system protein | - |
| JQU52_RS05435 (JQU52_05460) | - | 1070521..1070688 (+) | 168 | WP_230340120.1 | hypothetical protein | - |
| JQU52_RS05440 (JQU52_05465) | - | 1070819..1071532 (+) | 714 | WP_230340121.1 | Fic family protein | - |
| JQU52_RS05445 (JQU52_05470) | - | 1072463..1073395 (+) | 933 | WP_230340122.1 | Bro-N domain-containing protein | - |
| JQU52_RS05450 (JQU52_05475) | - | 1073463..1073726 (-) | 264 | WP_230340123.1 | hypothetical protein | - |
| JQU52_RS05455 (JQU52_05480) | - | 1073725..1073850 (+) | 126 | WP_230340124.1 | lipoprotein | - |
| JQU52_RS05460 (JQU52_05485) | - | 1073847..1074557 (+) | 711 | WP_230340125.1 | virB8 family protein | - |
| JQU52_RS05465 (JQU52_05490) | virB9 | 1074572..1075384 (+) | 813 | WP_230340126.1 | P-type conjugative transfer protein VirB9 | - |
| JQU52_RS05470 (JQU52_05495) | virB10 | 1075396..1076661 (+) | 1266 | WP_230340127.1 | type IV secretion system protein VirB10 | - |
| JQU52_RS05475 (JQU52_05500) | - | 1076734..1077864 (+) | 1131 | WP_230340128.1 | ATPase, T2SS/T4P/T4SS family | - |
| JQU52_RS05480 (JQU52_05505) | - | 1077910..1078437 (+) | 528 | WP_230340129.1 | hypothetical protein | - |
| JQU52_RS05485 (JQU52_05510) | - | 1078378..1079316 (-) | 939 | WP_230340130.1 | hypothetical protein | - |
| JQU52_RS05490 (JQU52_05515) | - | 1079366..1079797 (+) | 432 | WP_230340131.1 | fibroblast growth factor | - |
| JQU52_RS05495 | - | 1079926..1080705 (+) | 780 | WP_230340132.1 | hypothetical protein | - |
| JQU52_RS05500 (JQU52_05525) | - | 1080815..1081087 (+) | 273 | WP_230340133.1 | hypothetical protein | - |
| JQU52_RS05505 (JQU52_05530) | - | 1081494..1081664 (+) | 171 | WP_230340134.1 | hypothetical protein | - |
| JQU52_RS05510 (JQU52_05535) | - | 1081737..1084670 (+) | 2934 | WP_230340135.1 | S8 family serine peptidase | - |
| JQU52_RS05515 (JQU52_05540) | - | 1084949..1085953 (+) | 1005 | WP_230340136.1 | OmpA family protein | - |
| JQU52_RS05520 (JQU52_05545) | - | 1085968..1087947 (+) | 1980 | WP_379061262.1 | YadA-like family protein | - |
| JQU52_RS05525 (JQU52_05550) | - | 1088076..1088222 (+) | 147 | WP_230340138.1 | hypothetical protein | - |
| JQU52_RS05530 (JQU52_05555) | - | 1088176..1088568 (+) | 393 | WP_230340139.1 | hypothetical protein | - |
| JQU52_RS05535 (JQU52_05560) | - | 1088645..1089139 (+) | 495 | WP_230340140.1 | thermonuclease family protein | - |
| JQU52_RS05540 (JQU52_05565) | - | 1089174..1089371 (+) | 198 | WP_230340141.1 | hypothetical protein | - |
| JQU52_RS14850 (JQU52_05570) | - | 1089418..1089636 (+) | 219 | WP_379061289.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JQU52_RS05545 (JQU52_05575) | - | 1089739..1090074 (+) | 336 | WP_230340142.1 | hypothetical protein | - |
| JQU52_RS05550 (JQU52_05580) | - | 1090104..1090457 (-) | 354 | WP_230340143.1 | hypothetical protein | - |
| JQU52_RS05555 (JQU52_05585) | - | 1090512..1090940 (+) | 429 | WP_230340144.1 | single-stranded DNA-binding protein | - |
| JQU52_RS05560 (JQU52_05590) | vapB | 1091055..1091282 (+) | 228 | WP_230340145.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| JQU52_RS05565 (JQU52_05595) | vapC | 1091294..1091689 (+) | 396 | WP_328301398.1 | tRNA(fMet)-specific endonuclease VapC | - |
| JQU52_RS05570 (JQU52_05600) | - | 1091916..1092191 (+) | 276 | WP_230340147.1 | DUF1778 domain-containing protein | - |
| JQU52_RS05575 (JQU52_05605) | - | 1092194..1092700 (+) | 507 | WP_230340148.1 | GNAT family N-acetyltransferase | - |
| JQU52_RS05580 (JQU52_05610) | - | 1092761..1094761 (+) | 2001 | WP_230340149.1 | type IV secretory system conjugative DNA transfer family protein | - |
| JQU52_RS05585 (JQU52_05615) | - | 1094856..1095377 (+) | 522 | WP_230340150.1 | hypothetical protein | - |
| JQU52_RS05590 (JQU52_05620) | - | 1095407..1095670 (-) | 264 | WP_230340151.1 | Txe/YoeB family addiction module toxin | - |
| JQU52_RS05595 (JQU52_05625) | - | 1095667..1095921 (-) | 255 | WP_230340152.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| JQU52_RS05600 (JQU52_05630) | - | 1096044..1096802 (+) | 759 | WP_230340153.1 | hypothetical protein | - |
| JQU52_RS05605 (JQU52_05635) | - | 1096805..1097194 (+) | 390 | WP_230340154.1 | hypothetical protein | - |
| JQU52_RS05610 (JQU52_05640) | - | 1097241..1097846 (+) | 606 | WP_230340155.1 | hypothetical protein | - |
| JQU52_RS05615 (JQU52_05645) | - | 1097939..1102078 (+) | 4140 | WP_230340156.1 | LPD7 domain-containing protein | - |
| JQU52_RS05620 (JQU52_05650) | - | 1102236..1104014 (+) | 1779 | WP_230340157.1 | hypothetical protein | - |
| JQU52_RS05625 (JQU52_05655) | - | 1104135..1104671 (+) | 537 | WP_230340158.1 | plasmid mobilization protein | - |
| JQU52_RS05630 (JQU52_05660) | - | 1104682..1105755 (+) | 1074 | WP_230340159.1 | relaxase/mobilization nuclease domain-containing protein | - |
| JQU52_RS05635 (JQU52_05665) | - | 1105825..1106262 (+) | 438 | WP_230340160.1 | DUF5131 family protein | - |
| JQU52_RS05640 (JQU52_05670) | - | 1106156..1106437 (+) | 282 | WP_230340161.1 | DUF1778 domain-containing protein | - |
| JQU52_RS05645 (JQU52_05675) | - | 1106428..1106964 (+) | 537 | WP_230340162.1 | GNAT family N-acetyltransferase | - |
| JQU52_RS05650 (JQU52_05680) | - | 1107388..1107807 (-) | 420 | WP_230340163.1 | hypothetical protein | - |
| JQU52_RS05655 (JQU52_05685) | - | 1107993..1108394 (-) | 402 | WP_230340164.1 | phosphoglycerate kinase | - |
| JQU52_RS05660 (JQU52_05690) | - | 1109012..1109533 (+) | 522 | WP_230340165.1 | hypothetical protein | - |
| JQU52_RS05665 (JQU52_05695) | - | 1109613..1110026 (+) | 414 | WP_230340166.1 | DUF4878 domain-containing protein | - |
| JQU52_RS05670 (JQU52_05700) | - | 1110080..1110709 (+) | 630 | WP_230340167.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| JQU52_RS05675 (JQU52_05705) | - | 1110746..1111165 (-) | 420 | WP_230340168.1 | type II toxin-antitoxin system VapC family toxin | - |
| JQU52_RS05680 (JQU52_05710) | - | 1111165..1111437 (-) | 273 | WP_230340169.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| JQU52_RS05685 (JQU52_05715) | - | 1111947..1112555 (-) | 609 | WP_230340170.1 | hypothetical protein | - |
| JQU52_RS05690 (JQU52_05720) | - | 1112746..1112991 (-) | 246 | WP_230340171.1 | helix-turn-helix transcriptional regulator | - |
| JQU52_RS05695 (JQU52_05725) | - | 1113090..1113725 (+) | 636 | WP_230340172.1 | helix-turn-helix domain-containing protein | - |
| JQU52_RS05700 (JQU52_05730) | - | 1114423..1114653 (+) | 231 | WP_230340173.1 | antitoxin MazE family protein | - |
| JQU52_RS05705 (JQU52_05735) | - | 1114650..1114976 (+) | 327 | WP_230340174.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| JQU52_RS05715 (JQU52_05745) | - | 1115187..1115357 (+) | 171 | WP_230340175.1 | hypothetical protein | - |
| JQU52_RS05720 (JQU52_05750) | - | 1115720..1116517 (-) | 798 | WP_230340176.1 | hypothetical protein | - |
| JQU52_RS05725 (JQU52_05755) | - | 1116517..1116741 (-) | 225 | WP_230340177.1 | hypothetical protein | - |
| JQU52_RS05730 (JQU52_05760) | - | 1116849..1117532 (+) | 684 | WP_230340178.1 | S24 family peptidase | - |
| JQU52_RS05740 (JQU52_05770) | - | 1118647..1118817 (+) | 171 | WP_230340179.1 | hypothetical protein | - |
| JQU52_RS05745 (JQU52_05775) | - | 1119178..1119786 (-) | 609 | WP_230340180.1 | hypothetical protein | - |
| JQU52_RS05750 (JQU52_05780) | - | 1119971..1120165 (-) | 195 | WP_230340181.1 | Cro/CI family transcriptional regulator | - |
| JQU52_RS05755 (JQU52_05785) | - | 1120270..1120917 (+) | 648 | WP_230340182.1 | LexA family transcriptional regulator | - |
| JQU52_RS05760 (JQU52_05790) | - | 1121615..1121845 (+) | 231 | WP_230340173.1 | antitoxin MazE family protein | - |
| JQU52_RS05765 (JQU52_05795) | - | 1121842..1122060 (+) | 219 | WP_230340183.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| JQU52_RS05775 (JQU52_05805) | - | 1122373..1123263 (+) | 891 | WP_230340184.1 | hypothetical protein | - |
| JQU52_RS05780 (JQU52_05810) | - | 1123282..1123977 (+) | 696 | WP_230340185.1 | hypothetical protein | - |
| JQU52_RS05785 (JQU52_05815) | - | 1124125..1124670 (+) | 546 | WP_230340186.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| JQU52_RS05790 (JQU52_05820) | - | 1124618..1125604 (+) | 987 | WP_230340187.1 | conjugal transfer protein TraL | - |
| JQU52_RS05795 (JQU52_05825) | - | 1125582..1126016 (+) | 435 | WP_230340188.1 | hypothetical protein | - |
| JQU52_RS05800 (JQU52_05830) | - | 1126029..1126283 (+) | 255 | WP_230340189.1 | toxin PIN | - |
| JQU52_RS05805 (JQU52_05835) | - | 1126329..1126553 (+) | 225 | WP_230340190.1 | hypothetical protein | - |
| JQU52_RS05810 (JQU52_05840) | - | 1126566..1126895 (+) | 330 | WP_230340191.1 | helix-turn-helix domain-containing protein | - |
| JQU52_RS05815 (JQU52_05845) | - | 1126811..1127809 (+) | 999 | WP_268866638.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17498.77 Da Isoelectric Point: 7.1664
>NTDB_id=536745 JQU52_RS05390 WP_230340111.1 1062871..1063344(+) (ssb) [Paralysiella testudinis strain 26B]
MTVNKVQLIGRLGRDPEVRYMPNGDAVCHFSIATEEQWKDRDGNRQTRTEWHSIVLYRKLGEIAGQYLRKGGLVYIDGRI
QSRKYTGKDGVERTAYEIIGNEMKMLGSKELGVKAANRPAEEAQPQATPSAMPPVGGQSSQRPAPVPVDDIDDDIPF
MTVNKVQLIGRLGRDPEVRYMPNGDAVCHFSIATEEQWKDRDGNRQTRTEWHSIVLYRKLGEIAGQYLRKGGLVYIDGRI
QSRKYTGKDGVERTAYEIIGNEMKMLGSKELGVKAANRPAEEAQPQATPSAMPPVGGQSSQRPAPVPVDDIDDDIPF
Nucleotide
Download Length: 474 bp
>NTDB_id=536745 JQU52_RS05390 WP_230340111.1 1062871..1063344(+) (ssb) [Paralysiella testudinis strain 26B]
ATGACTGTGAACAAAGTCCAACTTATCGGCCGCCTCGGGCGCGACCCGGAAGTACGCTATATGCCCAACGGCGATGCCGT
ATGCCATTTTTCCATCGCCACTGAAGAACAGTGGAAAGACCGTGACGGCAACCGTCAAACCCGCACCGAATGGCACAGCA
TCGTGTTGTACCGCAAGCTGGGCGAAATCGCCGGGCAATATTTGCGCAAAGGTGGTTTGGTTTACATTGACGGACGCATT
CAGAGCCGTAAATACACCGGCAAAGACGGGGTGGAACGTACTGCGTATGAAATCATCGGTAACGAAATGAAAATGCTCGG
CAGCAAGGAGCTTGGCGTGAAGGCTGCAAACCGCCCGGCTGAGGAGGCTCAACCTCAAGCTACACCGTCGGCAATGCCGC
CTGTTGGTGGTCAAAGCAGTCAGCGGCCAGCCCCCGTACCTGTGGATGATATTGACGACGACATCCCGTTTTGA
ATGACTGTGAACAAAGTCCAACTTATCGGCCGCCTCGGGCGCGACCCGGAAGTACGCTATATGCCCAACGGCGATGCCGT
ATGCCATTTTTCCATCGCCACTGAAGAACAGTGGAAAGACCGTGACGGCAACCGTCAAACCCGCACCGAATGGCACAGCA
TCGTGTTGTACCGCAAGCTGGGCGAAATCGCCGGGCAATATTTGCGCAAAGGTGGTTTGGTTTACATTGACGGACGCATT
CAGAGCCGTAAATACACCGGCAAAGACGGGGTGGAACGTACTGCGTATGAAATCATCGGTAACGAAATGAAAATGCTCGG
CAGCAAGGAGCTTGGCGTGAAGGCTGCAAACCGCCCGGCTGAGGAGGCTCAACCTCAAGCTACACCGTCGGCAATGCCGC
CTGTTGGTGGTCAAAGCAGTCAGCGGCCAGCCCCCGTACCTGTGGATGATATTGACGACGACATCCCGTTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Neisseria meningitidis MC58 |
59.77 |
100 |
0.662 |
| ssb | Neisseria gonorrhoeae MS11 |
58.621 |
100 |
0.65 |
| ssb | Vibrio cholerae strain A1552 |
44.767 |
100 |
0.49 |
| ssb | Glaesserella parasuis strain SC1401 |
40.113 |
100 |
0.452 |