Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JQU52_RS00300 Genome accession   NZ_CP069798
Coordinates   60934..61332 (-) Length   132 a.a.
NCBI ID   WP_268866622.1    Uniprot ID   A0A892ZET6
Organism   Paralysiella testudinis strain 26B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 55934..66332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQU52_RS00260 (JQU52_00260) - 56578..56853 (+) 276 Protein_50 transposase -
  JQU52_RS00265 (JQU52_00265) - 56953..57234 (+) 282 WP_230339219.1 hypothetical protein -
  JQU52_RS00270 (JQU52_00270) - 57259..57768 (+) 510 WP_230339220.1 winged helix-turn-helix domain-containing protein -
  JQU52_RS00275 - 57834..58309 (+) 476 Protein_53 IS630 family transposase -
  JQU52_RS00280 (JQU52_00285) - 58577..58798 (+) 222 WP_230339221.1 hypothetical protein -
  JQU52_RS00285 (JQU52_00290) - 58888..59653 (+) 766 Protein_55 IS5 family transposase -
  JQU52_RS00290 (JQU52_00295) - 59718..60233 (+) 516 WP_230339222.1 hypothetical protein -
  JQU52_RS00295 (JQU52_00300) - 60591..60869 (-) 279 WP_230339223.1 hypothetical protein -
  JQU52_RS00300 (JQU52_00305) ssb 60934..61332 (-) 399 WP_268866622.1 single-stranded DNA-binding protein Machinery gene
  JQU52_RS00305 (JQU52_00310) - 62020..63393 (+) 1374 WP_230339224.1 sodium:alanine symporter family protein -
  JQU52_RS00310 (JQU52_00315) - 63628..65439 (-) 1812 WP_230339225.1 Na/Pi cotransporter family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15297.46 Da        Isoelectric Point: 9.7293

>NTDB_id=536736 JQU52_RS00300 WP_268866622.1 60934..61332(-) (ssb) [Paralysiella testudinis strain 26B]
MTVNKVQLIGRLGRDPEVRYMPNGDAVCHFSIATEEQWKDRDGNRQTRTEWHNIVLYRKLGEIAGQYLRKGGLVYIDGRI
QSRKYTGKDGMERIAYEIIGNEMKMLGSKELGVKVANRPTEEAQSQPYRCRY

Nucleotide


Download         Length: 399 bp        

>NTDB_id=536736 JQU52_RS00300 WP_268866622.1 60934..61332(-) (ssb) [Paralysiella testudinis strain 26B]
ATGACTGTGAACAAAGTCCAACTTATCGGCCGCCTCGGGCGCGACCCGGAAGTACGCTATATGCCCAACGGGGATGCCGT
ATGCCATTTTTCCATTGCCACTGAAGAACAGTGGAAAGACCGTGACGGCAACCGCCAAACCCGCACCGAGTGGCACAACA
TTGTGTTGTACCGCAAGCTGGGTGAAATCGCCGGGCAATATTTGCGCAAAGGTGGTTTGGTTTACATTGACGGACGCATT
CAGAGCCGTAAATACACCGGTAAAGACGGGATGGAACGTATTGCGTATGAAATCATCGGTAACGAAATGAAAATGCTCGG
CAGCAAGGAACTTGGCGTGAAGGTGGCCAACCGCCCGACTGAGGAGGCTCAAAGTCAGCCGTACCGGTGCCGGTATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

75.229

82.576

0.621
  ssb Neisseria gonorrhoeae MS11

75.229

82.576

0.621
  ssb Vibrio cholerae strain A1552

50.893

84.848

0.432
  ssb Glaesserella parasuis strain SC1401

49.55

84.091

0.417