Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JS559_RS09615 Genome accession   NZ_CP069795
Coordinates   2025894..2027048 (+) Length   384 a.a.
NCBI ID   WP_237610926.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain A-85/14     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2020894..2032048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS559_RS11455 (JS559_09590) - 2021000..2021737 (+) 738 Protein_1853 hypothetical protein -
  JS559_RS09590 (JS559_09595) - 2021861..2022049 (-) 189 WP_005599189.1 hypothetical protein -
  JS559_RS09595 (JS559_09600) - 2022083..2022517 (+) 435 WP_005609137.1 factor H binding protein domain-containing protein -
  JS559_RS09600 (JS559_09605) - 2022664..2024070 (+) 1407 WP_420914098.1 surface lipoprotein assembly modifier -
  JS559_RS09605 (JS559_09610) rfaD 2024130..2025056 (-) 927 WP_237610924.1 ADP-glyceromanno-heptose 6-epimerase -
  JS559_RS09610 (JS559_09615) def 2025196..2025708 (-) 513 WP_237610925.1 peptide deformylase -
  JS559_RS09615 (JS559_09620) dprA 2025894..2027048 (+) 1155 WP_237610926.1 DNA-processing protein DprA Machinery gene
  JS559_RS09620 (JS559_09625) - 2027092..2029098 (-) 2007 WP_237610927.1 OPT family oligopeptide transporter -
  JS559_RS09625 (JS559_09630) - 2029319..2030674 (-) 1356 WP_237610928.1 PTS ascorbate transporter subunit IIC -
  JS559_RS09630 (JS559_09635) - 2030683..2030955 (-) 273 WP_005599206.1 PTS sugar transporter subunit IIB -
  JS559_RS09635 (JS559_09640) secE 2031258..2031671 (+) 414 WP_005599209.1 preprotein translocase subunit SecE -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42828.09 Da        Isoelectric Point: 5.1005

>NTDB_id=536674 JS559_RS09615 WP_237610926.1 2025894..2027048(+) (dprA) [Actinobacillus pleuropneumoniae strain A-85/14]
MSQADLLKLLQIPQLGAQRIARLLSEVDFAQFCQYDKRQLQQIGWNEKQIQRWFNPEMRWIESALVWAEQPNQHLLTLFD
EEYPFLLRQISIAPPVLFVRGSLSSLSLPQIAIVGSRDFSAYGEYWAGYFSEQLVKHHLAVTSGLAIGIDGFCHQRAVAE
QGITIAVLGSGLDQVYPARHKKLAEQIVESGGALVSEFFPNQPPLAENFPRRNRIISGLSLGTLVVEATLNSGSLITARY
ALEQGREVFALPNSVQNPYAQGCHKLIKEGAVLTETIEDILQAIQYQLPDQPWQQALFEPPQAVENAQFFTKADVPNKVN
HLAKKLPELTDCQQQIVAHISLEPISIDDLAKATALEVDTLLVELLGLELLSVIKQVSGGYVRQ

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=536674 JS559_RS09615 WP_237610926.1 2025894..2027048(+) (dprA) [Actinobacillus pleuropneumoniae strain A-85/14]
ATGTCTCAGGCTGATTTACTGAAATTATTGCAGATTCCGCAACTGGGGGCGCAGCGCATTGCTCGTCTGTTATCCGAAGT
GGATTTTGCCCAATTTTGCCAATATGACAAACGTCAATTACAACAAATCGGTTGGAACGAGAAACAGATTCAACGTTGGT
TCAATCCGGAAATGCGTTGGATTGAGAGTGCATTGGTGTGGGCGGAACAACCGAATCAACATTTATTGACTTTATTTGAT
GAGGAATATCCGTTTTTATTACGGCAAATCAGCATCGCACCGCCGGTATTATTTGTGCGAGGTTCGCTAAGTAGTTTGAG
CTTACCGCAAATTGCGATTGTCGGTAGTCGAGACTTTTCCGCCTACGGAGAATACTGGGCGGGCTATTTTAGCGAGCAAT
TGGTTAAACATCATTTGGCGGTTACTAGCGGACTTGCAATCGGCATAGACGGTTTTTGCCATCAGCGAGCGGTAGCGGAA
CAGGGTATTACGATTGCTGTGTTGGGCAGCGGTTTAGATCAAGTCTATCCGGCAAGGCACAAAAAATTGGCGGAGCAAAT
TGTCGAAAGCGGCGGGGCGTTAGTGTCGGAATTTTTTCCGAATCAACCGCCGCTTGCCGAAAATTTCCCTCGTCGTAATC
GCATTATCAGCGGTTTGTCACTCGGTACGTTAGTGGTGGAAGCCACATTAAATAGCGGTTCGTTGATTACCGCCCGTTAT
GCGTTGGAACAAGGGCGAGAAGTGTTTGCATTACCGAATTCGGTACAAAATCCGTATGCACAAGGCTGTCATAAACTGAT
CAAAGAAGGGGCGGTTTTAACCGAAACGATAGAGGATATTTTACAGGCAATTCAATATCAACTGCCGGATCAGCCTTGGC
AACAGGCTCTGTTTGAACCGCCACAAGCGGTTGAAAACGCACAATTTTTTACAAAAGCAGATGTGCCGAATAAGGTCAAT
CATCTTGCAAAAAAATTGCCGGAATTGACCGATTGTCAGCAACAAATTGTGGCGCATATTAGTCTTGAACCGATTTCGAT
TGACGATTTGGCGAAAGCGACCGCATTGGAAGTGGATACACTATTGGTTGAATTACTGGGTTTGGAATTATTAAGTGTGA
TTAAGCAGGTAAGCGGCGGTTATGTCAGACAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-274)

DprA winged helix domain (DprA_WH)

(325-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

74.67

98.698

0.737
  dprA Vibrio campbellii strain DS40M4

46.457

99.219

0.461
  dprA Haemophilus influenzae Rd KW20

49.856

90.365

0.451
  dprA Vibrio cholerae strain A1552

42.377

100

0.427
  dprA Legionella pneumophila strain ERS1305867

37.598

99.74

0.375